{
    "type": "genome",
    "identifier": "GCF_002993335.1",
    "organism": "Alkalicoccus urumqiensis",
    "title": "Alkalicoccus urumqiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Academy of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002993335.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08624596",
        "wgs_master": "PVNS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1548213",
        "species_taxid": "1548213",
        "organism_name": "Alkalicoccus urumqiensis",
        "infraspecific_name": "strain=BZ-SZ-XJ18",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/03/11",
        "asm_name": "ASM299333v1",
        "asm_submitter": "Chinese Academy of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_002993335.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/993/335/GCF_002993335.1_ASM299333v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3280710",
        "genome_size_ungapped": "3280610",
        "gc_percent": "51.500000",
        "replicon_count": "0",
        "scaffold_count": "26",
        "contig_count": "26",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002993335.1-RS_2024_04_30",
        "annotation_date": "2024-04-30",
        "total_gene_count": "3231",
        "protein_coding_gene_count": "3144",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-03-11",
    "dateModified": "2018-03-11",
    "datePublished": "2018-03-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alkalicoccus urumqiensis"
        ],
        "sample_taxid": [
            "1548213"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Xinjiang Uyghur Autonomous Region"
        ],
        "sample_host_location_id": [],
        "data_size": "0.929 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3280710",
        "Number of Sequences": "26",
        "Longest Sequences (bp)": "389665",
        "N50 (bp)": "219019",
        "Gap Ratio (%)": "0.003048",
        "GCcontent (%)": "51.7",
        "Number of CDSs": "3168",
        "Average Protein Length": "298.2",
        "Coding Ratio (%)": "86.4",
        "Number of rRNAs": "6",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Alkalicoccus urumqiensis",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Alkalicoccus saliphilus",
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                "accession": "GCA_003044065.1",
                "taxid": 200989,
                "species_taxid": 200989,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Alteribacter natronophilus",
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                "species_taxid": 2583810,
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                "status": "below_threshold"
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            {
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                "taxid": 427072,
                "species_taxid": 427072,
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                "ani": 77.3824,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalicoccus halolimnae",
                "strain": "strain=BZ-SZ-XJ29",
                "accession": "GCA_008014775.1",
                "taxid": 1667239,
                "species_taxid": 1667239,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3378,
                "matched_fragments": 130,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salisediminibacterium selenitireducens",
                "strain": "strain=MLS10",
                "accession": "GCA_000093085.1",
                "taxid": 85683,
                "species_taxid": 85683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1556,
                "matched_fragments": 84,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalicoccus daliensis",
                "strain": "strain=CGMCC 1.10369",
                "accession": "GCA_900103955.1",
                "taxid": 745820,
                "species_taxid": 745820,
                "relation_to_type": "type",
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                "ani": 76.9437,
                "matched_fragments": 118,
                "total_fragments": 1083,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteribacter lacisalsi",
                "strain": "strain=YSP-3",
                "accession": "GCA_003226345.1",
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                "species_taxid": 2045244,
                "relation_to_type": "type",
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                "ani": 76.9193,
                "matched_fragments": 70,
                "total_fragments": 1083,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_002993335.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_003560495.1",
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                "num_clustered_genomes": 2,
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            },
            {
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.071,
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    "_genome_taxon": [
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        "urumqiensis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}