{
    "type": "genome",
    "identifier": "GCF_002993975.1",
    "organism": "Apilactobacillus micheneri",
    "title": "Apilactobacillus micheneri",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Riverside",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002993975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08331815",
        "wgs_master": "POSO00000000.1",
        "refseq_category": "na",
        "taxid": "1899430",
        "species_taxid": "1899430",
        "organism_name": "Apilactobacillus micheneri",
        "infraspecific_name": "strain=Hlig3",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/03/12",
        "asm_name": "ASM299397v1",
        "asm_submitter": "University of California, Riverside",
        "gbrs_paired_asm": "GCA_002993975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/993/975/GCF_002993975.1_ASM299397v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1462173",
        "genome_size_ungapped": "1462173",
        "gc_percent": "30.500000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002993975.1-RS_2024_11_18",
        "annotation_date": "2024-11-18",
        "total_gene_count": "1542",
        "protein_coding_gene_count": "1415",
        "non_coding_gene_count": "91",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-03-12",
    "dateModified": "2018-03-12",
    "datePublished": "2018-03-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Apilactobacillus micheneri"
        ],
        "sample_taxid": [
            "1899430"
        ],
        "sample_host_organism": [
            "Halictus ligatus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Colorado River East of Austin, TX"
        ],
        "sample_host_location_id": [],
        "data_size": "0.402 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1462173",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "413047",
        "N50 (bp)": "395902",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.7",
        "Number of CDSs": "1485",
        "Average Protein Length": "291.6",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "8",
        "Number of tRNAs": "73",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Apilactobacillus micheneri",
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                "relation_to_type": "type",
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            },
            {
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                "accession": "GCA_002993965.1",
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                "species_taxid": 2008380,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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            {
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                "ani": 80.1177,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Apilactobacillus zhangqiuensis",
                "strain": "strain=F502-1",
                "accession": "GCA_019656215.1",
                "taxid": 2841031,
                "species_taxid": 2841031,
                "relation_to_type": "type",
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            {
                "organism_name": "Apilactobacillus xinyiensis",
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                "accession": "GCA_019656235.1",
                "taxid": 2841032,
                "species_taxid": 2841032,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4937,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Apilactobacillus waqarii",
                "strain": "strain=HBW1",
                "accession": "GCA_019061205.1",
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                "species_taxid": 2851006,
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                "ani": 79.4198,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lentilactobacillus kosonis",
                "strain": "strain=NBRC111893",
                "accession": "GCA_003864335.1",
                "taxid": 2810561,
                "species_taxid": 2810561,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8026,
                "matched_fragments": 60,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_002993975.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus",
                "ani_circumscription_radius": 95.0,
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                "accession": "GCF_002993965.1",
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                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "98.30",
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            },
            {
                "accession": "GCF_002994005.1",
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                "mean_intra_species_ani": "N/A",
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            },
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            },
            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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}