{ "type": "genome", "identifier": "GCF_002995495.1", "organism": "Actinocorallia populi", "title": "Actinocorallia populi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sichuan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002995495.1", "bioproject": "PRJNA224116", "biosample": "SAMN08393332", "wgs_master": "PVZV00000000.1", "refseq_category": "reference genome", "taxid": "2079200", "species_taxid": "2079200", "organism_name": "Actinocorallia populi", "infraspecific_name": "strain=A251", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/13", "asm_name": "ASM299549v1", "asm_submitter": "Sichuan University", "gbrs_paired_asm": "GCA_002995495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/995/495/GCF_002995495.1_ASM299549v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8253623", "genome_size_ungapped": "8253402", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002995495.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "7861", "protein_coding_gene_count": "7716", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-13", "dateModified": "2018-03-13", "datePublished": "2018-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinocorallia populi" ], "sample_taxid": [ "2079200" ], "sample_host_organism": [ "Populus adenopoda" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Sichuan, Shuangliu county" ], "sample_host_location_id": [], "data_size": "2.209 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8253623", "Number of Sequences": "25", "Longest Sequences (bp)": "1405409", "N50 (bp)": "749123", "Gap Ratio (%)": "0.002678", "GCcontent (%)": "71.5", "Number of CDSs": "7889", "Average Protein Length": "314.5", "Coding Ratio (%)": "90.2", "Number of rRNAs": "4", "Number of tRNAs": "69", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinocorallia herbida", "strain": "strain=DSM 44254", "accession": "GCA_003751225.1", "taxid": 58109, "species_taxid": 58109, "relation_to_type": "type", "validated": true, "ani": 81.6978, "matched_fragments": 1534, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonospora curvata", "strain": "strain=DSM 43183", "accession": "GCA_000024385.1", "taxid": 2020, "species_taxid": 2020, "relation_to_type": "type", "validated": true, "ani": 79.4356, "matched_fragments": 911, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonospora catenispora", "strain": "strain=3-22-3", "accession": "GCA_006363815.1", "taxid": 2493090, "species_taxid": 2493090, "relation_to_type": "type", "validated": true, "ani": 79.3604, "matched_fragments": 893, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura hibisca", "strain": "strain=NBRC 15177", "accession": "GCA_001552635.1", "taxid": 68565, "species_taxid": 68565, "relation_to_type": "type", "validated": true, "ani": 79.2997, "matched_fragments": 1196, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura macrotermitis", "strain": "strain=RB68", "accession": "GCA_009604375.1", "taxid": 2585200, "species_taxid": 2585200, "relation_to_type": "type", "validated": true, "ani": 79.2266, "matched_fragments": 1221, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura namibiensis", "strain": "strain=DSM 44197", "accession": "GCA_014138665.1", "taxid": 182080, "species_taxid": 182080, "relation_to_type": "type", "validated": true, "ani": 79.1972, "matched_fragments": 1221, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura viridis", "strain": "strain=DSM 43175", "accession": "GCA_015751755.1", "taxid": 58110, "species_taxid": 58110, "relation_to_type": "type", "validated": true, "ani": 79.1959, "matched_fragments": 1130, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura 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"accession": "GCA_900188445.1", "taxid": 240840, "species_taxid": 240840, "relation_to_type": "type", "validated": true, "ani": 79.0334, "matched_fragments": 1120, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonospora umbrina", "strain": "strain=DSM 43927", "accession": "GCA_003386555.1", "taxid": 111806, "species_taxid": 111806, "relation_to_type": "type", "validated": true, "ani": 79.0058, "matched_fragments": 998, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura coerulea", "strain": "strain=DSM 43675", "accession": "GCA_014208105.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 78.9335, "matched_fragments": 1087, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura logoneensis", "strain": "strain=NEAU-G17", "accession": "GCA_003428695.1", "taxid": 2293572, "species_taxid": 2293572, "relation_to_type": "type", "validated": true, "ani": 78.9205, "matched_fragments": 903, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura coerulea", "strain": "strain=JCM 3320", "accession": "GCA_014648535.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 78.8898, "matched_fragments": 1069, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 78.873, "matched_fragments": 1234, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura physcomitrii", "strain": "strain=LD22", "accession": "GCA_008923205.2", "taxid": 2650748, "species_taxid": 2650748, "relation_to_type": "type", "validated": true, "ani": 78.8469, "matched_fragments": 1174, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura nitritigenes", "strain": "strain=L46", "accession": "GCA_017573545.1", "taxid": 134602, "species_taxid": 134602, "relation_to_type": "type", "validated": true, "ani": 78.8069, "matched_fragments": 1243, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura montaniterrae", "strain": "strain=CYP1-1B", "accession": "GCA_008923365.1", "taxid": 1803903, "species_taxid": 1803903, "relation_to_type": "type", "validated": true, "ani": 78.7694, "matched_fragments": 1222, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura oligospora", "strain": "strain=ATCC 43269", "accession": "GCA_000518265.1", "taxid": 111804, "species_taxid": 111804, "relation_to_type": "type", "validated": true, "ani": 78.5043, "matched_fragments": 1064, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 78.4924, "matched_fragments": 998, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 78.4529, "matched_fragments": 1091, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura decatromicini", "strain": "strain=CYP1-5", "accession": "GCA_008121305.1", "taxid": 2604572, "species_taxid": 2604572, "relation_to_type": "type", "validated": true, "ani": 78.3601, "matched_fragments": 1030, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus spadix", "strain": "strain=KCTC 9252", "accession": "GCA_024055725.1", "taxid": 79912, "species_taxid": 79912, "relation_to_type": "type", "validated": true, "ani": 78.1481, "matched_fragments": 865, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus bryophytorum", "strain": "strain=DSM 102200", "accession": "GCA_006716425.1", "taxid": 1490222, "species_taxid": 1490222, "relation_to_type": "type", "validated": true, "ani": 77.8001, "matched_fragments": 836, "total_fragments": 2739, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002995495.1", "gtdb_species": "s__Actinocorallia populi", "ani": 100.0, "matched_fragments": 2739, "total_fragments": 2739, "gtdb_taxonomy": 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