{ "type": "genome", "identifier": "GCF_002995785.1", "organism": "Clostridium liquoris", "title": "Clostridium liquoris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002995785.1", "bioproject": "PRJNA224116", "biosample": "SAMN08638830", "wgs_master": "PVXO00000000.1", "refseq_category": "reference genome", "taxid": "1289519", "species_taxid": "1289519", "organism_name": "Clostridium liquoris", "infraspecific_name": "strain=DSM 100320", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/14", "asm_name": "ASM299578v1", "asm_submitter": "Goettingen Genomics Laboratory", "gbrs_paired_asm": "GCA_002995785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/995/785/GCF_002995785.1_ASM299578v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2876197", "genome_size_ungapped": "2876197", "gc_percent": "31.000000", "replicon_count": "0", "scaffold_count": "75", "contig_count": "75", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002995785.1-RS_2024_04_12", "annotation_date": "2024-04-12", "total_gene_count": "2908", "protein_coding_gene_count": "2761", "non_coding_gene_count": "93", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-14", "dateModified": "2018-03-14", "datePublished": "2018-03-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium liquoris" ], "sample_taxid": [ "1289519" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Clostridium mobile", "strain": "strain=MSJ-11", "accession": "GCA_018918285.1", "taxid": 2841512, "species_taxid": 2841512, "relation_to_type": "type", "validated": true, "ani": 78.3211, "matched_fragments": 271, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cochlearium", "strain": "strain=NCTC13027", "accession": "GCA_900187165.1", "taxid": 1494, "species_taxid": 1494, "relation_to_type": "type", "validated": true, "ani": 78.3086, "matched_fragments": 258, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tepidum", "strain": "strain=IEH 97212", "accession": "GCA_002008345.1", "taxid": 1962263, "species_taxid": 1962263, "relation_to_type": "type", "validated": true, "ani": 78.178, "matched_fragments": 212, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tetani", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000619945.1", "gtdb_species": "s__Clostridium_AO lundense", "ani": 83.6693, "matched_fragments": 673, "total_fragments": 921, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AO", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017873215.1", "gtdb_species": "s__Clostridium_AO tetanomorphum", "ani": 81.3498, "matched_fragments": 569, "total_fragments": 921, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AO", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.71", "mean_intra_species_af": "0.98", 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