{ "type": "genome", "identifier": "GCF_002995845.1", "organism": "Clostridium luticellarii", "title": "Clostridium luticellarii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002995845.1", "bioproject": "PRJNA224116", "biosample": "SAMN08638834", "wgs_master": "PVXP00000000.1", "refseq_category": "reference genome", "taxid": "1691940", "species_taxid": "1691940", "organism_name": "Clostridium luticellarii", "infraspecific_name": "strain=DSM 29923", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/14", "asm_name": "ASM299584v1", "asm_submitter": "Goettingen Genomics Laboratory", "gbrs_paired_asm": "GCA_002995845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/995/845/GCF_002995845.1_ASM299584v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3754778", "genome_size_ungapped": "3754778", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "165", "contig_count": "165", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002995845.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3737", "protein_coding_gene_count": "3596", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-14", "dateModified": "2018-03-14", "datePublished": "2018-03-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium luticellarii" ], "sample_taxid": [ "1691940" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.051 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3754778", "Number of Sequences": "165", "Longest Sequences (bp)": "167209", "N50 (bp)": "45074", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.0", "Number of CDSs": "3643", "Average Protein Length": "294.2", "Coding Ratio (%)": "85.6", "Number of rRNAs": "4", "Number of tRNAs": "68", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium luticellarii", "strain": "strain=DSM 29923", "accession": "GCA_002995845.1", "taxid": 1691940, "species_taxid": 1691940, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1156, 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"organism_name": "Clostridium scatologenes", "strain": "strain=ATCC 25775", "accession": "GCA_000968375.1", "taxid": 1548, "species_taxid": 1548, "relation_to_type": "type", "validated": true, "ani": 77.3001, "matched_fragments": 181, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium carboxidivorans", "strain": "strain=P7", "accession": "GCA_001038625.1", "taxid": 217159, "species_taxid": 217159, "relation_to_type": "type", "validated": true, "ani": 77.2876, "matched_fragments": 188, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium algifaecis", "strain": "strain=DSM 28783", "accession": "GCA_017874415.1", "taxid": 1472040, "species_taxid": 1472040, "relation_to_type": "type", "validated": true, "ani": 77.2617, "matched_fragments": 206, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium liquoris", "strain": 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1509, "species_taxid": 1509, "relation_to_type": "type", "validated": true, "ani": 76.0439, "matched_fragments": 98, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium sporogenes", "strain": "strain=NCIMB 10696", "accession": "GCA_000973705.1", "taxid": 1509, "species_taxid": 1509, "relation_to_type": "type", "validated": true, "ani": 76.0126, "matched_fragments": 94, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium sporogenes", "strain": "strain=NCTC13020", "accession": "GCA_900461305.1", "taxid": 1509, "species_taxid": 1509, "relation_to_type": "type", "validated": true, "ani": 75.9638, "matched_fragments": 97, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002995845.1", "gtdb_species": "s__Clostridium_B 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