{ "type": "genome", "identifier": "GCF_003001815.1", "organism": "Actinoplanes italicus", "title": "Actinoplanes italicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003001815.1", "bioproject": "PRJNA224116", "biosample": "SAMN07621215", "wgs_master": "PVMZ00000000.1", "refseq_category": "na", "taxid": "113567", "species_taxid": "113567", "organism_name": "Actinoplanes italicus", "infraspecific_name": "strain=DSM 43146", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/15", "asm_name": "ASM300181v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003001815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/001/815/GCF_003001815.1_ASM300181v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "11152790", "genome_size_ungapped": "11152585", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003001815.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "10207", "protein_coding_gene_count": "9981", "non_coding_gene_count": "99", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-15", "dateModified": "2018-03-15", "datePublished": "2018-03-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes italicus" ], "sample_taxid": [ "113567" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.998 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "11152790", "Number of Sequences": "71", "Longest Sequences (bp)": "805686", "N50 (bp)": "341505", "Gap Ratio (%)": "0.001838", "GCcontent (%)": "70.4", "Number of CDSs": "10215", "Average Protein Length": "325.0", "Coding Ratio (%)": "89.3", "Number of rRNAs": "2", "Number of tRNAs": "109", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes italicus", "strain": "strain=DSM 43146", "accession": "GCA_003001815.1", "taxid": 113567, "species_taxid": 113567, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3678, "total_fragments": 3681, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoplanes italicus", "strain": "strain=NBRC 13911", "accession": "GCA_016862235.1", "taxid": 113567, "species_taxid": 113567, "relation_to_type": "type", "validated": true, "ani": 99.9712, "matched_fragments": 3538, "total_fragments": 3681, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoplanes philippinensis", "strain": "strain=NBRC 13878", "accession": "GCA_016862335.1", "taxid": 35752, "species_taxid": 35752, "relation_to_type": "type", "validated": true, "ani": 86.2388, "matched_fragments": 2403, "total_fragments": 3681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes xinjiangensis", "strain": "strain=DSM 45184", "accession": "GCA_003148685.1", "taxid": 512350, "species_taxid": 512350, "relation_to_type": "type", "validated": true, "ani": 86.193, "matched_fragments": 2487, "total_fragments": 3681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes philippinensis", "strain": "strain=DSM 43019", "accession": "GCA_900113015.1", "taxid": 35752, "species_taxid": 35752, "relation_to_type": "type", "validated": true, "ani": 86.1408, "matched_fragments": 2454, "total_fragments": 3681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes capillaceus", "strain": "strain=NBRC 16408", "accession": "GCA_016862055.1", "taxid": 76756, "species_taxid": 76756, "relation_to_type": "type", "validated": true, "ani": 85.0094, "matched_fragments": 2137, "total_fragments": 3681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes campanulatus", "strain": "strain=JCM 3059", "accession": "GCA_014647795.1", "taxid": 113559, "species_taxid": 113559, "relation_to_type": "type", "validated": true, "ani": 84.9909, "matched_fragments": 2184, "total_fragments": 3681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes campanulatus", "strain": "strain=NBRC 12511", "accession": "GCA_016862035.1", "taxid": 113559, "species_taxid": 113559, "relation_to_type": "type", "validated": true, "ani": 84.8889, "matched_fragments": 2209, "total_fragments": 3681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 84.843, "matched_fragments": 2166, "total_fragments": 3681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes utahensis", "strain": "strain=NBRC 13244", "accession": "GCA_016862455.1", "taxid": 1869, "species_taxid": 1869, "relation_to_type": "type", "validated": true, "ani": 84.7836, "matched_fragments": 2136, "total_fragments": 3681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes derwentensis", "strain": "strain=NBRC 14935", "accession": "GCA_016862135.1", "taxid": 113562, "species_taxid": 113562, "relation_to_type": "type", "validated": true, "ani": 83.7593, "matched_fragments": 2055, "total_fragments": 3681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes derwentensis", "strain": "strain=DSM 43941", "accession": "GCA_900104725.1", "taxid": 113562, "species_taxid": 113562, "relation_to_type": "type", "validated": true, "ani": 83.7174, "matched_fragments": 2098, "total_fragments": 3681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes cyaneus", "strain": "strain=NBRC 14990", "accession": "GCA_016862095.1", "taxid": 52696, "species_taxid": 52696, "relation_to_type": "type", "validated": true, "ani": 81.8435, "matched_fragments": 1862, "total_fragments": 3681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium aurantiacum", "strain": "strain=NRRL B-8018", "accession": "GCA_025264705.1", "taxid": 35754, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinoplanes", "italicus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }