{ "type": "genome", "identifier": "GCF_003001955.1", "organism": "Prauserella shujinwangii", "title": "Prauserella shujinwangii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003001955.1", "bioproject": "PRJNA224116", "biosample": "SAMN06297070", "wgs_master": "PVNH00000000.1", "refseq_category": "reference genome", "taxid": "1453103", "species_taxid": "1453103", "organism_name": "Prauserella shujinwangii", "infraspecific_name": "strain=CGMCC 4.7125", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/15", "asm_name": "ASM300195v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003001955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/001/955/GCF_003001955.1_ASM300195v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6105433", "genome_size_ungapped": "6105433", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003001955.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "5967", "protein_coding_gene_count": "5860", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-15", "dateModified": "2018-03-15", "datePublished": "2018-03-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Prauserella shujinwangii" ], "sample_taxid": [ "1453103" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.623 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6105433", "Number of Sequences": "21", "Longest Sequences (bp)": "710829", "N50 (bp)": "537190", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.2", "Number of CDSs": "5976", "Average Protein Length": "311.9", "Coding Ratio (%)": "91.6", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prauserella muralis", "strain": "strain=DSM 45305", "accession": "GCA_007993965.1", "taxid": 588067, "species_taxid": 588067, "relation_to_type": "type", "validated": true, "ani": 83.0361, "matched_fragments": 1365, 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"GCA_011758765.1", "taxid": 185678, "species_taxid": 185678, "relation_to_type": "type", "validated": true, "ani": 80.3522, "matched_fragments": 975, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis granulosa", "strain": "strain=DSM 45669", "accession": "GCA_011758745.1", "taxid": 185684, "species_taxid": 185684, "relation_to_type": "type", "validated": true, "ani": 80.3514, "matched_fragments": 954, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis bartoniae", "strain": "strain=DSM 45807", "accession": "GCA_007713755.1", "taxid": 941986, "species_taxid": 941986, "relation_to_type": "type", "validated": true, "ani": 80.339, "matched_fragments": 999, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis cihanbeyliensis", "strain": "strain=DSM 45679", "accession": "GCA_006715045.1", "taxid": 1128664, "species_taxid": 1128664, "relation_to_type": "type", "validated": true, "ani": 80.3117, "matched_fragments": 1055, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis bartoniae", "strain": "strain=DSM 45807", "accession": "GCA_014191255.1", "taxid": 941986, "species_taxid": 941986, "relation_to_type": "type", "validated": true, "ani": 80.305, "matched_fragments": 1029, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis sacchari", "strain": "strain=DSM 44468", "accession": "GCA_900114035.1", "taxid": 115433, "species_taxid": 115433, "relation_to_type": "type", "validated": true, "ani": 80.2701, "matched_fragments": 1020, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=JCM 30562", "accession": "GCA_007713745.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 80.2345, "matched_fragments": 978, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=KCTC 39523", "accession": "GCA_021391495.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 80.2328, "matched_fragments": 1009, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella aidingensis", "strain": "strain=DSM 45266", "accession": "GCA_024171865.1", "taxid": 387890, "species_taxid": 387890, "relation_to_type": "type", "validated": true, "ani": 80.1998, "matched_fragments": 878, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella isguenensis", "strain": "strain=CECT 8577", "accession": "GCA_014191605.1", "taxid": 1470180, "species_taxid": 1470180, "relation_to_type": "type", "validated": true, "ani": 80.1848, 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95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003001955.1", "gtdb_species": "s__Saccharomonospora shujinwangii", "ani": 100.0, "matched_fragments": 2024, "total_fragments": 2024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_016464705.1", "gtdb_species": "s__Saccharomonospora sp016464705", "ani": 83.9138, "matched_fragments": 1425, "total_fragments": 2024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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