{ "type": "genome", "identifier": "GCF_003002095.1", "organism": "Allonocardiopsis opalescens", "title": "Allonocardiopsis opalescens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003002095.1", "bioproject": "PRJNA224116", "biosample": "SAMN07621481", "wgs_master": "PVZC00000000.1", "refseq_category": "reference genome", "taxid": "1144618", "species_taxid": "1144618", "organism_name": "Allonocardiopsis opalescens", "infraspecific_name": "strain=DSM 45601", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/15", "asm_name": "ASM300209v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003002095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/002/095/GCF_003002095.1_ASM300209v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6972847", "genome_size_ungapped": "6972583", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-05-04", "total_gene_count": "6341", "protein_coding_gene_count": "6240", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-15", "dateModified": "2018-03-15", "datePublished": "2018-03-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Allonocardiopsis opalescens" ], "sample_taxid": [ "1144618" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], 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"strain": "strain=CECT 8712", "accession": "GCA_014203695.1", "taxid": 1478215, "species_taxid": 1478215, "relation_to_type": "type", "validated": true, "ani": 78.3043, "matched_fragments": 674, "total_fragments": 2314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. dassonvillei", "strain": "strain=DSM 43111", "accession": "GCA_000092985.1", "taxid": 568208, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 78.2711, "matched_fragments": 892, "total_fragments": 2314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis chromatogenes", "strain": "strain=YIM 90109", "accession": "GCA_000341185.1", "taxid": 280239, "species_taxid": 280239, "relation_to_type": "type", "validated": true, "ani": 78.1865, "matched_fragments": 927, "total_fragments": 2314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", 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