{ "type": "genome", "identifier": "GCF_003002875.1", "organism": "Arcticibacter pallidicorallinus", "title": "Arcticibacter pallidicorallinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003002875.1", "bioproject": "PRJNA224116", "biosample": "SAMN06296520", "wgs_master": "PVTH00000000.1", "refseq_category": "reference genome", "taxid": "1259464", "species_taxid": "1259464", "organism_name": "Arcticibacter pallidicorallinus", "infraspecific_name": "strain=CGMCC 1.9313", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/15", "asm_name": "ASM300287v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003002875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/002/875/GCF_003002875.1_ASM300287v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4116409", "genome_size_ungapped": "4116409", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003002875.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3483", "protein_coding_gene_count": "3417", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-15", "dateModified": "2018-03-15", "datePublished": "2018-03-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Arcticibacter pallidicorallinus" ], "sample_taxid": [ "1259464" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.181 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4116409", "Number of Sequences": "23", "Longest Sequences (bp)": "737506", "N50 (bp)": "483985", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.6", "Number of CDSs": "3390", "Average Protein Length": "366.1", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arcticibacter pallidicorallinus", "strain": "strain=CGMCC 1.9313", "accession": "GCA_003002875.1", "taxid": 1259464, 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"vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Arcticibacter", "pallidicorallinus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }