{ "type": "genome", "identifier": "GCF_003002895.1", "organism": "Knoellia remsis", "title": "Knoellia remsis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003002895.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421826", "wgs_master": "PVTI00000000.1", "refseq_category": "reference genome", "taxid": "407159", "species_taxid": "407159", "organism_name": "Knoellia remsis", "infraspecific_name": "strain=ATCC BAA-1496", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/15", "asm_name": "ASM300289v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003002895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/002/895/GCF_003002895.1_ASM300289v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3573222", "genome_size_ungapped": "3573222", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "62", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003002895.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3425", "protein_coding_gene_count": "3338", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-15", "dateModified": "2018-03-15", "datePublished": "2018-03-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Knoellia remsis" ], "sample_taxid": [ "407159" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.956 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3573222", "Number of Sequences": "62", "Longest Sequences (bp)": "276785", "N50 (bp)": "111180", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.7", "Number of CDSs": "3361", "Average Protein Length": "323.3", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Knoellia remsis", "strain": "strain=ATCC BAA-1496", "accession": "GCA_003002895.1", "taxid": 407159, "species_taxid": 407159, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1159, "total_fragments": 1160, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Knoellia flava", "strain": "strain=TL1", "accession": "GCA_000768675.1", "taxid": 913969, "species_taxid": 913969, "relation_to_type": "type", "validated": true, "ani": 84.4149, "matched_fragments": 790, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia flava", "strain": "strain=CGMCC 1.10749", "accession": "GCA_014636255.1", "taxid": 913969, "species_taxid": 913969, "relation_to_type": "type", "validated": true, "ani": 84.3764, "matched_fragments": 822, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia aerolata", "strain": "strain=DSM 18566", "accession": "GCA_000768695.1", "taxid": 442954, "species_taxid": 442954, "relation_to_type": "type", "validated": true, "ani": 83.6795, "matched_fragments": 732, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia subterranea", "strain": 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