{ "type": "genome", "identifier": "GCF_003002975.1", "organism": "Marivita geojedonensis", "title": "Marivita geojedonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003002975.1", "bioproject": "PRJNA224116", "biosample": "SAMN07620990", "wgs_master": "PVTN00000000.1", "refseq_category": "na", "taxid": "1123756", "species_taxid": "1123756", "organism_name": "Marivita geojedonensis", "infraspecific_name": "strain=DSM 29432", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/15", "asm_name": "ASM300297v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003002975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/002/975/GCF_003002975.1_ASM300297v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4326589", "genome_size_ungapped": "4326589", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "67", "contig_count": "67", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003002975.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "4284", "protein_coding_gene_count": "4188", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-15", "dateModified": "2018-03-15", "datePublished": "2018-03-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Marivita geojedonensis" ], "sample_taxid": [ "1123756" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.222 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4326589", "Number of Sequences": "67", "Longest Sequences (bp)": "643218", "N50 (bp)": "125109", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.9", "Number of CDSs": "4206", "Average Protein Length": "306.0", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marivita geojedonensis", "strain": "strain=DSM 29432", "accession": "GCA_003002975.1", "taxid": 1123756, "species_taxid": 1123756, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1403, "total_fragments": 1407, 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"organism_name": "Marivita hallyeonensis", "strain": "strain=DSM 29431", "accession": "GCA_900129875.1", "taxid": 996342, "species_taxid": 996342, "relation_to_type": "type", "validated": true, "ani": 80.3428, "matched_fragments": 717, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 78.2363, "matched_fragments": 347, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 78.2033, "matched_fragments": 428, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puniceibacterium confluentis", "strain": 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