{ "type": "genome", "identifier": "GCF_003004785.1", "organism": "Alsobacter soli", "title": "Alsobacter soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003004785.1", "bioproject": "PRJNA224116", "biosample": "SAMN08660935", "wgs_master": "PVZS00000000.1", "refseq_category": "reference genome", "taxid": "2109933", "species_taxid": "2109933", "organism_name": "Alsobacter soli", "infraspecific_name": "strain=SH9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/15", "asm_name": "ASM300478v1", "asm_submitter": "Shanghai Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_003004785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/004/785/GCF_003004785.1_ASM300478v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5190571", "genome_size_ungapped": "5190571", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "96", "contig_count": "96", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003004785.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "4890", "protein_coding_gene_count": "4772", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-15", "dateModified": "2018-03-15", "datePublished": "2018-03-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Alsobacter soli" ], "sample_taxid": [ "2109933" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Shanghai" ], "sample_host_location_id": [], "data_size": "1.419 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5190571", "Number of Sequences": "96", "Longest Sequences (bp)": "337371", "N50 (bp)": "173971", "Gap Ratio (%)": "0.001214", "GCcontent (%)": "68.5", "Number of CDSs": "4856", "Average Protein Length": "310.5", "Coding Ratio (%)": "87.1", "Number of rRNAs": "1", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alsobacter soli", "strain": "strain=SH9", "accession": "GCA_003004785.1", "taxid": 2109933, "species_taxid": 2109933, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1682, "total_fragments": 1689, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alsobacter metallidurans", "strain": "strain=CGMCC 1.12214", "accession": "GCA_014636935.1", "taxid": 340221, "species_taxid": 340221, "relation_to_type": "type", "validated": true, "ani": 82.9388, "matched_fragments": 1025, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 78.6653, "matched_fragments": 535, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus composti", "strain": "strain=DSM 101465", "accession": "GCA_018398355.1", "taxid": 1743235, "species_taxid": 1743235, "relation_to_type": "type", "validated": true, "ani": 78.5277, "matched_fragments": 436, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { 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