{ "type": "genome", "identifier": "GCF_003006155.1", "organism": "Salinicola tamaricis", "title": "Salinicola tamaricis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003006155.1", "bioproject": "PRJNA224116", "biosample": "SAMN07653055", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1771309", "species_taxid": "1771309", "organism_name": "Salinicola tamaricis", "infraspecific_name": "strain=F01", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/16", "asm_name": "ASM300615v1", "asm_submitter": "Shandong Normal University", "gbrs_paired_asm": "GCA_003006155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/006/155/GCF_003006155.1_ASM300615v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4276240", "genome_size_ungapped": "4276240", "gc_percent": "65.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003006155.1-RS_2024_04_08", "annotation_date": "2024-04-08", "total_gene_count": "4450", "protein_coding_gene_count": "3717", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-16", "dateModified": "2018-03-16", "datePublished": "2018-03-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinicola tamaricis" ], "sample_taxid": [ "1771309" ], "sample_host_organism": [ "Tamarix" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: ShanDong, Dongying, Yellow River delta" ], "sample_host_location_id": [], "data_size": "1.173 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4276240", "Number of Sequences": "1", "Longest Sequences (bp)": "4276240", "N50 (bp)": "4276240", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.7", "Number of CDSs": "4633", "Average Protein Length": "258.8", "Coding Ratio (%)": "84.1", "Number of rRNAs": "15", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salinicola tamaricis", "strain": "strain=F01", "accession": "GCA_003006155.1", "taxid": 1771309, "species_taxid": 1771309, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1425, "total_fragments": 1425, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salinicola endophyticus", "strain": "strain=CPA92", "accession": "GCA_003206575.1", "taxid": 1949083, "species_taxid": 1949083, "relation_to_type": "type", "validated": true, "ani": 93.2679, "matched_fragments": 1268, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola lusitanus", "strain": "strain=CR50", "accession": "GCA_003206045.1", "taxid": 1949085, "species_taxid": 1949085, "relation_to_type": "type", "validated": true, "ani": 83.6624, "matched_fragments": 972, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola acroporae", "strain": "strain=LMG 28587", "accession": "GCA_003206615.1", "taxid": 1541440, "species_taxid": 1541440, "relation_to_type": "type", "validated": true, "ani": 82.9985, "matched_fragments": 943, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola peritrichatus", "strain": "strain=JCM 18795", "accession": "GCA_003206715.1", "taxid": 1267424, "species_taxid": 1267424, "relation_to_type": "type", "validated": true, "ani": 82.1652, "matched_fragments": 858, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola salarius", "strain": "strain=DSM 18044", "accession": "GCA_003206135.1", "taxid": 430457, "species_taxid": 430457, "relation_to_type": "type", "validated": true, "ani": 81.845, "matched_fragments": 837, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola halophilus", "strain": "strain=CECT 5903", "accession": "GCA_003206155.1", "taxid": 184065, "species_taxid": 184065, "relation_to_type": "type", "validated": true, "ani": 81.572, "matched_fragments": 779, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola halophyticus", "strain": "strain=CR45", "accession": "GCA_003206695.1", "taxid": 1808881, "species_taxid": 1808881, "relation_to_type": "type", "validated": true, "ani": 81.4819, "matched_fragments": 885, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola rhizosphaerae", "strain": "strain=KCTC 32998", "accession": "GCA_014652715.1", "taxid": 1443141, "species_taxid": 1443141, "relation_to_type": "type", "validated": true, "ani": 81.2071, "matched_fragments": 825, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola aestuarinus", "strain": "strain=CPA62", "accession": "GCA_003206645.1", "taxid": 1949082, "species_taxid": 1949082, "relation_to_type": "type", "validated": true, "ani": 80.9205, "matched_fragments": 771, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 80.3379, "matched_fragments": 548, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 80.2692, "matched_fragments": 558, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 80.2588, "matched_fragments": 559, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, "relation_to_type": "type", "validated": true, "ani": 79.9838, "matched_fragments": 484, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 79.8019, "matched_fragments": 508, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 79.7953, "matched_fragments": 519, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 79.6297, "matched_fragments": 528, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aerodenitrificans", "strain": "strain=MCCC 1A11058", "accession": "GCA_021404405.1", "taxid": 2733483, "species_taxid": 2733483, "relation_to_type": "type", "validated": true, "ani": 79.5919, "matched_fragments": 527, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas kenyensis", "strain": "strain=DSM 17331", "accession": "GCA_022341445.1", "taxid": 321266, "species_taxid": 321266, "relation_to_type": "type", "validated": true, "ani": 79.4183, "matched_fragments": 474, "total_fragments": 1425, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003006155.1", "gtdb_species": "s__Salinicola tamaricis", "ani": 100.0, "matched_fragments": 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