{ "type": "genome", "identifier": "GCF_003007675.1", "organism": "Marinobacter fuscus", "title": "Marinobacter fuscus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003007675.1", "bioproject": "PRJNA224116", "biosample": "SAMN08661773", "wgs_master": "PXNP00000000.1", "refseq_category": "reference genome", "taxid": "2109942", "species_taxid": "2109942", "organism_name": "Marinobacter fuscus", "infraspecific_name": "strain=NH169-3", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/18", "asm_name": "ASM300767v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_003007675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/007/675/GCF_003007675.1_ASM300767v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4125126", "genome_size_ungapped": "4124926", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003007675.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3899", "protein_coding_gene_count": "3762", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-18", "dateModified": "2018-03-18", "datePublished": "2018-03-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter fuscus" ], "sample_taxid": [ "2109942" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: South China Sea, northern region" ], "sample_host_location_id": [], "data_size": "1.163 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4125126", "Number of Sequences": "111", "Longest Sequences (bp)": "471460", "N50 (bp)": "207311", "Gap Ratio (%)": "0.004873", "GCcontent (%)": "57.2", "Number of CDSs": "3788", "Average Protein Length": "319.6", "Coding Ratio (%)": "88.0", "Number of rRNAs": "12", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter fuscus", "strain": "strain=NH169-3", "accession": "GCA_003007675.1", "taxid": 2109942, "species_taxid": 2109942, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1312, "total_fragments": 1317, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 81.8352, "matched_fragments": 636, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nauticus", "strain": "strain=DSM 50418", "accession": "GCA_003634635.1", "taxid": 2743, "species_taxid": 2743, "relation_to_type": "type", "validated": true, "ani": 81.2411, "matched_fragments": 652, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis subsp. alexandrii", "strain": "strain=LZ-6", "accession": "GCA_005871095.1", "taxid": 2570350, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 80.7971, "matched_fragments": 619, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 80.6122, "matched_fragments": 593, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter daepoensis", "strain": "strain=DSM 16072", "accession": "GCA_000421165.1", "taxid": 262077, "species_taxid": 262077, "relation_to_type": "type", "validated": true, "ani": 80.3015, "matched_fragments": 589, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 79.9866, "matched_fragments": 488, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=JCM 30472", "accession": "GCA_003007685.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 79.9758, "matched_fragments": 541, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 79.8874, "matched_fragments": 438, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter subterrani", "strain": "strain=JG233", "accession": "GCA_001045555.1", "taxid": 1658765, "species_taxid": 1658765, "relation_to_type": "type", "validated": true, "ani": 79.875, "matched_fragments": 492, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 79.7873, "matched_fragments": 459, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=KCTC 23561", "accession": "GCA_014652295.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 79.7861, "matched_fragments": 459, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 79.5287, "matched_fragments": 462, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=LMG 23834", "accession": "GCA_002933295.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 79.2938, "matched_fragments": 487, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=KCTC 12185", "accession": "GCA_003363485.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 79.2574, "matched_fragments": 495, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter maroccanus", "strain": "strain=N4", "accession": "GCA_002933275.1", "taxid": 2055143, "species_taxid": 2055143, "relation_to_type": "type", "validated": true, "ani": 79.2184, "matched_fragments": 480, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter guineae", "strain": "strain=M3B", "accession": "GCA_002744735.1", "taxid": 432303, "species_taxid": 432303, "relation_to_type": "type", "validated": true, "ani": 78.9862, "matched_fragments": 462, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nitratireducens", "strain": "strain=AK21", "accession": "GCA_000708045.1", "taxid": 1137280, "species_taxid": 1137280, "relation_to_type": "type", "validated": true, "ani": 78.7346, "matched_fragments": 415, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 78.5632, "matched_fragments": 420, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter caseinilyticus", "strain": "strain=M3-13", "accession": "GCA_011074955.1", 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