{ "type": "genome", "identifier": "GCF_003007685.1", "organism": "Marinobacter halophilus", "title": "Marinobacter halophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003007685.1", "bioproject": "PRJNA224116", "biosample": "SAMN08661775", "wgs_master": "PXNN00000000.1", "refseq_category": "reference genome", "taxid": "1323740", "species_taxid": "1323740", "organism_name": "Marinobacter halophilus", "infraspecific_name": "strain=JCM 30472", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/18", "asm_name": "ASM300768v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_003007685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/007/685/GCF_003007685.1_ASM300768v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3917476", "genome_size_ungapped": "3917413", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003007685.1-RS_2024_04_15", "annotation_date": "2024-04-15", "total_gene_count": "3600", "protein_coding_gene_count": "3508", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-18", "dateModified": "2018-03-18", "datePublished": "2018-03-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter halophilus" ], "sample_taxid": [ "1323740" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xiaochaidan Lake" ], "sample_host_location_id": [], "data_size": "1.111 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3917476", "Number of Sequences": "17", "Longest Sequences (bp)": "907857", "N50 (bp)": "607916", "Gap Ratio (%)": "0.001659", "GCcontent (%)": "56.9", "Number of CDSs": "3570", "Average Protein Length": "330.6", "Coding Ratio (%)": "90.4", "Number of rRNAs": "12", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter halophilus", "strain": "strain=JCM 30472", "accession": "GCA_003007685.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1294, "total_fragments": 1297, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=CGMCC 1.12481", "accession": "GCA_014637865.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 99.9958, "matched_fragments": 1289, "total_fragments": 1297, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 81.7782, "matched_fragments": 877, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis subsp. alexandrii", "strain": "strain=LZ-6", "accession": "GCA_005871095.1", "taxid": 2570350, "species_taxid": 1389223, "relation_to_type": 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541, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=KCTC 12185", "accession": "GCA_003363485.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 79.3905, "matched_fragments": 547, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 79.1345, "matched_fragments": 498, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 78.664, "matched_fragments": 336, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter caseinilyticus", "strain": "strain=M3-13", "accession": "GCA_011074955.1", "taxid": 2692195, "species_taxid": 2692195, "relation_to_type": "type", "validated": true, "ani": 78.2011, "matched_fragments": 256, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter changyiensis", "strain": "strain=CLL7-20", "accession": "GCA_009193265.1", "taxid": 2604091, "species_taxid": 2604091, "relation_to_type": "type", "validated": true, "ani": 78.1879, "matched_fragments": 338, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gelidimuriae", "strain": "strain=BF04_CF-4", "accession": "GCA_000372805.1", "taxid": 2739064, "species_taxid": 2739064, "relation_to_type": "type", "validated": true, "ani": 78.1402, "matched_fragments": 302, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas chloritidismutans", "strain": "strain=AW-1", "accession": "GCA_000495915.1", "taxid": 203192, "species_taxid": 203192, "relation_to_type": "type", "validated": true, "ani": 76.2893, "matched_fragments": 107, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_024397575.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 76.0539, "matched_fragments": 95, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_900114065.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 75.9649, "matched_fragments": 94, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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"thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.958, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.041, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "halophilus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }