{ "type": "genome", "identifier": "GCF_003008425.1", "organism": "Aurantibacter aestuarii", "title": "Aurantibacter aestuarii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003008425.1", "bioproject": "PRJNA224116", "biosample": "SAMN08667564", "wgs_master": "PXOQ00000000.1", "refseq_category": "reference genome", "taxid": "1266046", "species_taxid": "1266046", "organism_name": "Aurantibacter aestuarii", "infraspecific_name": "strain=KCTC 32269", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/18", "asm_name": "ASM300842v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_003008425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/008/425/GCF_003008425.1_ASM300842v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2915806", "genome_size_ungapped": "2915698", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003008425.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2670", "protein_coding_gene_count": "2599", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-18", "dateModified": "2018-03-18", "datePublished": "2018-03-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Aurantibacter aestuarii" ], "sample_taxid": [ "1266046" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: South Sea" ], "sample_host_location_id": [], "data_size": "0.809 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2915806", "Number of Sequences": "19", "Longest Sequences (bp)": "1170132", "N50 (bp)": "898524", "Gap Ratio (%)": "0.003704", "GCcontent (%)": "32.1", "Number of CDSs": "2604", "Average Protein Length": "337.9", "Coding Ratio (%)": "90.5", "Number of rRNAs": "12", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aurantibacter aestuarii", "strain": "strain=KCTC 32269", "accession": "GCA_003008425.1", "taxid": 1266046, "species_taxid": 1266046, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 961, "total_fragments": 964, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Olleya aquimaris", "strain": "strain=DSM 24464", "accession": "GCA_003259525.1", "taxid": 639310, "species_taxid": 639310, "relation_to_type": "type", "validated": true, "ani": 78.4389, "matched_fragments": 284, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=KCTC 42117", "accession": "GCA_003008435.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 78.1968, "matched_fragments": 295, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter profundi", "strain": "strain=YC1039", "accession": "GCA_014764305.1", "taxid": 2708110, "species_taxid": 2708110, "relation_to_type": "type", "validated": true, "ani": 78.1131, "matched_fragments": 297, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=CECT 8597", "accession": "GCA_014191595.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 78.0113, "matched_fragments": 291, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens", "strain": "strain=DSM 18436", "accession": "GCA_000422365.1", "taxid": 393060, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 77.9954, "matched_fragments": 291, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya namhaensis", "strain": "strain=DSM 28881", "accession": "GCA_900114005.1", "taxid": 1144750, "species_taxid": 1144750, "relation_to_type": "type", "validated": true, "ani": 77.9863, "matched_fragments": 271, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya marilimosa", "strain": "strain=CAM030", "accession": "GCA_000518485.1", "taxid": 272164, "species_taxid": 272164, "relation_to_type": "type", "validated": true, "ani": 77.9759, "matched_fragments": 311, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix himadriensis", "strain": "strain=E4-9a", "accession": "GCA_001418105.1", "taxid": 641549, "species_taxid": 641549, "relation_to_type": "type", "validated": true, "ani": 77.9514, "matched_fragments": 269, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix mariniflava", "strain": "strain=AKS432", "accession": "GCA_001418015.1", "taxid": 342955, "species_taxid": 342955, "relation_to_type": "type", "validated": true, "ani": 77.9271, "matched_fragments": 301, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 77.783, "matched_fragments": 211, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 77.7684, "matched_fragments": 186, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_008630605.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 77.7135, "matched_fragments": 245, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 77.7135, "matched_fragments": 245, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia paragorgiae", "strain": "strain=DSM 23842", "accession": "GCA_900107625.1", "taxid": 283786, "species_taxid": 283786, "relation_to_type": "type", "validated": true, "ani": 77.7083, "matched_fragments": 205, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 77.6602, "matched_fragments": 242, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Formosa sediminum", "strain": "strain=PS13", "accession": "GCA_007197735.1", "taxid": 2594004, "species_taxid": 2594004, "relation_to_type": "type", "validated": true, "ani": 77.6369, "matched_fragments": 227, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella eckloniae", "strain": "strain=EC29", "accession": "GCA_013249045.1", "taxid": 1089306, "species_taxid": 1089306, "relation_to_type": "type", "validated": true, "ani": 77.6156, "matched_fragments": 195, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 77.5204, "matched_fragments": 240, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 77.47, "matched_fragments": 180, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 77.4587, "matched_fragments": 224, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 77.2782, "matched_fragments": 134, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 77.1985, "matched_fragments": 125, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Joostella atrarenae", "strain": "strain=M1-2", "accession": "GCA_021764745.1", "taxid": 679257, "species_taxid": 679257, "relation_to_type": "type", "validated": true, "ani": 76.7647, "matched_fragments": 108, "total_fragments": 964, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003008425.1", "gtdb_species": "s__Aurantibacter aestuarii", "ani": 100.0, "matched_fragments": 960, "total_fragments": 964, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aurantibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003259525.1", "gtdb_species": "s__Olleya aquimaris", "ani": 78.4246, "matched_fragments": 285, "total_fragments": 964, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Olleya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004843725.1", "gtdb_species": "s__Olleya sp004843725", "ani": 78.3258, "matched_fragments": 264, "total_fragments": 964, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Olleya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000211855.2", "gtdb_species": "s__Lacinutrix sp000211855", "ani": 78.2862, "matched_fragments": 342, "total_fragments": 964, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lacinutrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003663945.1", "gtdb_species": "s__Lacinutrix venerupis", "ani": 78.1642, "matched_fragments": 305, "total_fragments": 964, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lacinutrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.08", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014764305.1", 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