{ "type": "genome", "identifier": "GCF_003010955.1", "organism": "Phyllobacterium brassicacearum", "title": "Phyllobacterium brassicacearum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ARRIAM", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003010955.1", "bioproject": "PRJNA224116", "biosample": "SAMN08010942", "wgs_master": "PGGO00000000.1", "refseq_category": "reference genome", "taxid": "314235", "species_taxid": "314235", "organism_name": "Phyllobacterium brassicacearum", "infraspecific_name": "strain=STM 196", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/19", "asm_name": "ASM301095v1", "asm_submitter": "ARRIAM", "gbrs_paired_asm": "GCA_003010955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/010/955/GCF_003010955.1_ASM301095v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5793994", "genome_size_ungapped": "5793994", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "87", "contig_count": "87", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003010955.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "5785", "protein_coding_gene_count": "5526", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-19", "dateModified": "2018-03-19", "datePublished": "2018-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Phyllobacterium brassicacearum" ], "sample_taxid": [ "314235" ], "sample_host_organism": [ "Brassica napus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.649 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5793994", "Number of Sequences": "87", "Longest Sequences (bp)": "554321", "N50 (bp)": "192543", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.3", "Number of CDSs": "5786", "Average Protein Length": "287.0", "Coding Ratio (%)": "86.0", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phyllobacterium brassicacearum", "strain": "strain=STM 196", "accession": "GCA_003010955.1", "taxid": 314235, "species_taxid": 314235, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1888, "total_fragments": 1892, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Phyllobacterium zundukense", "strain": "strain=Tri-48; RCAM 03910", "accession": "GCA_002764115.1", "taxid": 1867719, "species_taxid": 1867719, "relation_to_type": "type", "validated": true, "ani": 83.2521, "matched_fragments": 1295, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium sophorae", "strain": "strain=CCBAU 03422", "accession": "GCA_003010965.1", "taxid": 1520277, "species_taxid": 1520277, "relation_to_type": "type", "validated": true, "ani": 82.2659, "matched_fragments": 1159, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium trifolii", "strain": "strain=CECT 7015", "accession": "GCA_014192095.1", "taxid": 300193, "species_taxid": 300193, "relation_to_type": "type", "validated": true, "ani": 81.5583, "matched_fragments": 981, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium bourgognense", "strain": "strain=31-25a", "accession": "GCA_003337575.1", "taxid": 314236, "species_taxid": 314236, "relation_to_type": "type", "validated": true, "ani": 81.298, "matched_fragments": 991, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium myrsinacearum", "strain": "strain=IAM 13584", "accession": "GCA_003182235.1", "taxid": 28101, "species_taxid": 28101, "relation_to_type": "type", "validated": true, "ani": 80.0904, "matched_fragments": 823, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium myrsinacearum", "strain": "strain=DSM 5892", "accession": "GCA_002980555.1", "taxid": 28101, "species_taxid": 28101, "relation_to_type": "type", "validated": true, "ani": 80.0852, "matched_fragments": 823, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium pellucidum", "strain": "strain=BT25", "accession": "GCA_013327855.1", "taxid": 2740464, "species_taxid": 2740464, "relation_to_type": "type", "validated": true, "ani": 80.0742, "matched_fragments": 797, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium calauticae", "strain": "strain=R2-JL", "accession": "GCA_019991125.1", "taxid": 2817027, "species_taxid": 2817027, "relation_to_type": "type", "validated": true, "ani": 80.0141, "matched_fragments": 826, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 77.7471, "matched_fragments": 361, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium waimense", "strain": 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2831468, "relation_to_type": "type", "validated": true, "ani": 76.8181, "matched_fragments": 236, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 76.8089, "matched_fragments": 237, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003010955.1", "gtdb_species": "s__Phyllobacterium brassicacearum", "ani": 100.0, "matched_fragments": 1888, "total_fragments": 1892, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", 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