{ "type": "genome", "identifier": "GCF_003010965.1", "organism": "Phyllobacterium sophorae", "title": "Phyllobacterium sophorae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ARRIAM", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003010965.1", "bioproject": "PRJNA224116", "biosample": "SAMN08010944", "wgs_master": "PGGM00000000.1", "refseq_category": "reference genome", "taxid": "1520277", "species_taxid": "1520277", "organism_name": "Phyllobacterium sophorae", "infraspecific_name": "strain=CCBAU 03422", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/19", "asm_name": "ASM301096v1", "asm_submitter": "ARRIAM", "gbrs_paired_asm": "GCA_003010965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/010/965/GCF_003010965.1_ASM301096v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6358399", "genome_size_ungapped": "6358399", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003010965.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "6139", "protein_coding_gene_count": "5925", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-19", "dateModified": "2018-03-19", "datePublished": "2018-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Phyllobacterium sophorae" ], "sample_taxid": [ "1520277" ], "sample_host_organism": [ "Sophora flavescens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.806 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6358399", "Number of Sequences": "49", "Longest Sequences (bp)": "815661", "N50 (bp)": "289216", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.0", "Number of CDSs": "6222", "Average Protein Length": "294.1", "Coding Ratio (%)": "86.3", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phyllobacterium sophorae", "strain": "strain=CCBAU 03422", "accession": "GCA_003010965.1", "taxid": 1520277, "species_taxid": 1520277, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2095, "total_fragments": 2097, 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"Rhizobium petrolearium", "strain": "strain=DSM 26482", "accession": "GCA_017873175.1", "taxid": 515361, "species_taxid": 515361, "relation_to_type": "type", "validated": true, "ani": 77.4085, "matched_fragments": 229, "total_fragments": 2097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sangaii", "strain": "strain=DSM 100039", "accession": "GCA_014207355.1", "taxid": 505389, "species_taxid": 505389, "relation_to_type": "type", "validated": true, "ani": 77.2693, "matched_fragments": 358, "total_fragments": 2097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium qingshengii", "strain": "strain=CGMCC 1.12097", "accession": "GCA_900103325.1", "taxid": 1165689, "species_taxid": 1165689, "relation_to_type": "type", "validated": true, "ani": 77.2159, "matched_fragments": 333, "total_fragments": 2097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sophorae", "strain": 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