{ "type": "genome", "identifier": "GCF_003011895.2", "organism": "Massilia glaciei", "title": "Massilia glaciei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003011895.2", "bioproject": "PRJNA224116", "biosample": "SAMN08685246", "wgs_master": "PXWF00000000.2", "refseq_category": "reference genome", "taxid": "1524097", "species_taxid": "1524097", "organism_name": "Massilia glaciei", "infraspecific_name": "strain=B448-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/14", "asm_name": "ASM301189v2", "asm_submitter": "Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_003011895.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/011/895/GCF_003011895.2_ASM301189v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6288546", "genome_size_ungapped": "6288546", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "348", "contig_count": "348", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003011895.2-RS_2024_08_18", "annotation_date": "2024-08-18", "total_gene_count": "5723", "protein_coding_gene_count": "5491", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-14", "dateModified": "2018-05-14", "datePublished": "2018-05-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Massilia glaciei" ], "sample_taxid": [ "1524097" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Muztagh Glacier, Tibetan Plateau" ], "sample_host_location_id": [], "data_size": "1.736 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6288546", "Number of Sequences": "348", "Longest Sequences (bp)": "142430", "N50 (bp)": "44864", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.4", "Number of CDSs": "5326", "Average Protein Length": "325.7", "Coding Ratio (%)": "82.8", "Number of rRNAs": "0", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilia glaciei", "strain": "strain=B448-2", "accession": "GCA_003011895.2", "taxid": 1524097, "species_taxid": 1524097, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1931, "total_fragments": 1945, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Massilia eurypsychrophila", "strain": "strain=JCM 30074", "accession": "GCA_002760655.1", "taxid": 1485217, "species_taxid": 1485217, "relation_to_type": "type", "validated": true, "ani": 82.5394, "matched_fragments": 971, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia atriviolacea", "strain": "strain=SOD", "accession": "GCA_003953935.1", "taxid": 2495579, "species_taxid": 2495579, "relation_to_type": "type", "validated": true, "ani": 82.2541, "matched_fragments": 1041, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia psychrophila", "strain": "strain=CGMCC 1.15196", "accession": "GCA_014641415.1", "taxid": 1603353, "species_taxid": 1603353, "relation_to_type": "type", "validated": true, "ani": 82.059, "matched_fragments": 835, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia psychrophila", "strain": "strain=JCM 30813", "accession": "GCA_002760665.1", "taxid": 1603353, "species_taxid": 1603353, "relation_to_type": "type", "validated": true, "ani": 82.0354, "matched_fragments": 845, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia mucilaginosa", "strain": "strain=CCM 8733", "accession": "GCA_011682145.1", "taxid": 2609282, "species_taxid": 2609282, "relation_to_type": "type", "validated": true, "ani": 81.888, "matched_fragments": 1044, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia polaris", "strain": "strain=RP-1-19", "accession": "GCA_012927275.1", "taxid": 2728846, "species_taxid": 2728846, "relation_to_type": "type", "validated": true, "ani": 81.8715, "matched_fragments": 843, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia frigida", "strain": "strain=CCM 8695", "accession": "GCA_011682175.1", "taxid": 2609281, "species_taxid": 2609281, "relation_to_type": "type", "validated": true, "ani": 81.8505, "matched_fragments": 1013, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia violaceinigra", "strain": "strain=B2", "accession": "GCA_002752675.1", "taxid": 2045208, "species_taxid": 2045208, "relation_to_type": "type", "validated": true, "ani": 81.8403, "matched_fragments": 982, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia rubra", "strain": "strain=CCM 8692", "accession": "GCA_011682065.1", "taxid": 2607910, "species_taxid": 2607910, "relation_to_type": "type", "validated": true, "ani": 81.8078, "matched_fragments": 1050, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 81.7222, "matched_fragments": 836, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia soli", "strain": "strain=R798", "accession": "GCA_016809835.2", "taxid": 2792854, "species_taxid": 2792854, "relation_to_type": "type", "validated": true, "ani": 81.649, "matched_fragments": 888, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia niastensis", "strain": "strain=DSM 21313", "accession": "GCA_000382345.1", "taxid": 544911, "species_taxid": 544911, "relation_to_type": "type", "validated": true, "ani": 81.2874, "matched_fragments": 894, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia terrae", "strain": "strain=JCM 31606", "accession": "GCA_024753145.1", "taxid": 1811224, "species_taxid": 1811224, "relation_to_type": "type", "validated": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas brunnea", "strain": "strain=LX20W", "accession": "GCA_014042345.1", "taxid": 2758569, "species_taxid": 2758569, "relation_to_type": "type", "validated": true, "ani": 80.8396, "matched_fragments": 848, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia timonae", "strain": "strain=CCUG 45783", "accession": "GCA_000315425.1", "taxid": 47229, "species_taxid": 47229, "relation_to_type": "type", "validated": true, "ani": 80.7414, "matched_fragments": 897, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia aromaticivorans", "strain": "strain=ML15P13", "accession": "GCA_013003915.1", "taxid": 2725995, "species_taxid": 2725995, "relation_to_type": "type", "validated": true, "ani": 80.6807, "matched_fragments": 850, "total_fragments": 1945, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": 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