{ "tc_result": [ { "organism_name": "Nitrosomonas supralitoralis", "strain": "strain=APG5", "accession": "GCA_003011925.2", "taxid": 2116706, "species_taxid": 2116706, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1147, "total_fragments": 1152, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nitrosomonas ureae", "strain": "strain=Nm10", "accession": "GCA_900105875.1", "taxid": 44577, "species_taxid": 44577, "relation_to_type": "type", "validated": true, "ani": 81.6719, "matched_fragments": 691, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrosomonas ureae", "strain": "strain=Nm10", "accession": "GCA_001455205.1", "taxid": 44577, "species_taxid": 44577, "relation_to_type": "type", "validated": true, "ani": 81.6298, "matched_fragments": 708, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrosomonas oligotropha", "strain": "strain=Nm45", "accession": "GCA_009833085.1", "taxid": 42354, "species_taxid": 42354, "relation_to_type": "type", "validated": true, "ani": 77.7743, "matched_fragments": 249, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrosomonas marina", "strain": "strain=Nm22", "accession": "GCA_900110145.1", "taxid": 917, "species_taxid": 917, "relation_to_type": "type", "validated": true, "ani": 76.6881, "matched_fragments": 67, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003011925.2", "gtdb_species": "s__Nitrosomonas sp003011925", "ani": 100.0, "matched_fragments": 1147, "total_fragments": 1152, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001455205.1", "gtdb_species": "s__Nitrosomonas ureae", "ani": 81.6336, "matched_fragments": 709, "total_fragments": 1152, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000175095.2", "gtdb_species": "s__Nitrosomonas sp000175095", "ani": 81.4346, "matched_fragments": 689, "total_fragments": 1152, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.06", "min_intra_species_ani": 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"mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000219585.1", "gtdb_species": "s__Nitrosomonas sp000219585", "ani": 77.8923, "matched_fragments": 372, "total_fragments": 1152, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001007935.1", "gtdb_species": "s__Nitrosomonas communis", "ani": 77.2349, "matched_fragments": 68, "total_fragments": 1152, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "96.92", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" } ] }