{ "type": "genome", "identifier": "GCF_003012055.1", "organism": "Peptostreptococcus russellii", "title": "Peptostreptococcus russellii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Rutger University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003012055.1", "bioproject": "PRJNA224116", "biosample": "SAMN03349661", "wgs_master": "JYGE00000000.1", "refseq_category": "reference genome", "taxid": "215200", "species_taxid": "215200", "organism_name": "Peptostreptococcus russellii", "infraspecific_name": "strain=RT-10B", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/20", "asm_name": "ASM301205v1", "asm_submitter": "Rutger University", "gbrs_paired_asm": "GCA_003012055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/012/055/GCF_003012055.1_ASM301205v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2082949", "genome_size_ungapped": "2082949", "gc_percent": "31.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003012055.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "1843", "protein_coding_gene_count": "1737", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-20", "dateModified": "2018-03-20", "datePublished": "2018-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Peptostreptococcus russellii" ], "sample_taxid": [ "215200" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.570 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2082949", "Number of Sequences": "12", "Longest Sequences (bp)": "724599", "N50 (bp)": "263531", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.0", "Number of CDSs": "1759", "Average Protein Length": "323.3", "Coding Ratio (%)": "81.9", "Number of rRNAs": "11", "Number of tRNAs": "61", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Peptostreptococcus russellii", "strain": "strain=RT-10B", "accession": "GCA_003012055.1", "taxid": 215200, "species_taxid": 215200, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 688, "total_fragments": 688, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Peptostreptococcus anaerobius", "strain": "strain=NCTC11460", "accession": "GCA_900454605.1", "taxid": 1261, "species_taxid": 1261, "relation_to_type": "type", "validated": true, "ani": 79.0363, "matched_fragments": 136, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptostreptococcus anaerobius", "strain": "strain=VPI 4330", "accession": "GCA_000318115.1", "taxid": 1261, "species_taxid": 1261, "relation_to_type": "type", "validated": true, "ani": 78.7663, "matched_fragments": 127, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptostreptococcus anaerobius", "strain": "strain=DSM 2949", "accession": "GCA_000381525.1", "taxid": 1261, "species_taxid": 1261, "relation_to_type": "type", "validated": true, "ani": 78.7587, "matched_fragments": 134, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptostreptococcus stomatis", "strain": "strain=DSM 17678", "accession": "GCA_000147675.2", "taxid": 341694, "species_taxid": 341694, "relation_to_type": "type", "validated": true, "ani": 78.7543, "matched_fragments": 112, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptostreptococcus porci", "strain": "strain=WCA-SAB-591-4A-A", "accession": "GCA_009695815.1", "taxid": 2652282, "species_taxid": 2652282, "relation_to_type": "type", "validated": true, "ani": 77.9356, "matched_fragments": 132, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptostreptococcus canis", "strain": "strain=DSM 27025", "accession": "GCA_014229965.1", "taxid": 1159213, "species_taxid": 1159213, "relation_to_type": "type", "validated": true, "ani": 77.6797, "matched_fragments": 162, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptacetobacter hiranonis", "strain": "strain=DSM 13275", "accession": "GCA_008151785.1", "taxid": 89152, "species_taxid": 89152, "relation_to_type": "type", "validated": true, "ani": 77.572, "matched_fragments": 67, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptostreptococcus canis", "strain": "strain=DSM 27025", "accession": "GCA_017874285.1", "taxid": 1159213, "species_taxid": 1159213, "relation_to_type": "type", "validated": true, "ani": 77.4985, "matched_fragments": 166, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptacetobacter hiranonis", "strain": "strain=DSM 13275", "accession": "GCA_000156055.1", "taxid": 89152, "species_taxid": 89152, "relation_to_type": "type", "validated": true, "ani": 76.8719, "matched_fragments": 63, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Romboutsia ilealis", "strain": "strain=CRIB", "accession": "GCA_900015215.1", "taxid": 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"d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000381525.1", "gtdb_species": "s__Peptostreptococcus anaerobius", "ani": 78.7618, "matched_fragments": 133, "total_fragments": 688, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_000147675.1", "gtdb_species": "s__Peptostreptococcus stomatis", "ani": 78.7543, "matched_fragments": 112, "total_fragments": 688, "gtdb_taxonomy": 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