{ "type": "genome", "identifier": "GCF_003012745.1", "organism": "Mesorhizobium ephedrae", "title": "Mesorhizobium ephedrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Forestry", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003012745.1", "bioproject": "PRJNA224116", "biosample": "SAMN08707968", "wgs_master": "PXYK00000000.1", "refseq_category": "reference genome", "taxid": "2116701", "species_taxid": "2116701", "organism_name": "Mesorhizobium ephedrae", "infraspecific_name": "strain=6GN-30", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/20", "asm_name": "ASM301274v1", "asm_submitter": "Chinese Academy of Forestry", "gbrs_paired_asm": "GCA_003012745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/012/745/GCF_003012745.1_ASM301274v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6112273", "genome_size_ungapped": "6112273", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "115", "contig_count": "115", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003012745.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "5895", "protein_coding_gene_count": "5753", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-20", "dateModified": "2018-03-20", "datePublished": "2018-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesorhizobium ephedrae" ], "sample_taxid": [ "2116701" ], "sample_host_organism": [ "plant" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang Province" ], "sample_host_location_id": [], "data_size": "1.673 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6112273", "Number of Sequences": "115", "Longest Sequences (bp)": "355111", "N50 (bp)": "165777", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.4", "Number of CDSs": "5858", "Average Protein Length": "305.8", "Coding Ratio (%)": "87.9", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium silamurunense", "strain": "strain=CCBAU 01550", "accession": "GCA_014843825.1", "taxid": 499528, "species_taxid": 499528, "relation_to_type": "type", "validated": true, "ani": 81.3774, "matched_fragments": 889, 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"Mesorhizobium hawassense", "strain": "strain=AC99b", "accession": "GCA_003289945.1", "taxid": 1209954, "species_taxid": 1209954, "relation_to_type": "type", "validated": true, "ani": 80.952, "matched_fragments": 1003, "total_fragments": 1995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium helmanticense", "strain": "strain=CSLC115N", "accession": "GCA_003034915.1", "taxid": 1776423, "species_taxid": 1776423, "relation_to_type": "type", "validated": true, "ani": 80.8725, "matched_fragments": 996, "total_fragments": 1995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium metallidurans", "strain": "strain=STM 2683", "accession": "GCA_000350085.1", "taxid": 489722, "species_taxid": 489722, "relation_to_type": "type", "validated": true, "ani": 80.8671, "matched_fragments": 973, "total_fragments": 1995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium camelthorni", "strain": "strain=CCNWXJ 40-4", "accession": "GCA_011045125.1", "taxid": 475069, "species_taxid": 475069, "relation_to_type": "type", "validated": true, "ani": 80.8415, "matched_fragments": 936, "total_fragments": 1995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter niigataensis", "strain": "strain=DSM 7050", "accession": "GCA_014200015.1", "taxid": 83265, "species_taxid": 83265, "relation_to_type": "type", "validated": true, "ani": 80.8099, "matched_fragments": 886, "total_fragments": 1995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sanjuanii", "strain": "strain=BSA136", "accession": "GCA_002529485.1", "taxid": 2037900, "species_taxid": 2037900, "relation_to_type": "type", "validated": true, "ani": 80.7422, "matched_fragments": 939, "total_fragments": 1995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 80.7358, "matched_fragments": 960, "total_fragments": 1995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 80.5692, "matched_fragments": 1037, "total_fragments": 1995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium qingshengii", "strain": "strain=CGMCC 1.12097", "accession": "GCA_900103325.1", "taxid": 1165689, "species_taxid": 1165689, "relation_to_type": "type", "validated": true, "ani": 80.5469, "matched_fragments": 968, "total_fragments": 1995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium albiziae", "strain": "strain=DSM 21822", "accession": "GCA_900114255.1", "taxid": 335020, "species_taxid": 335020, "relation_to_type": "type", "validated": true, "ani": 80.5141, "matched_fragments": 901, "total_fragments": 1995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter aminovorans", "strain": "strain=DSM 7048", "accession": "GCA_004341645.1", "taxid": 83263, "species_taxid": 83263, "relation_to_type": "type", "validated": true, "ani": 80.4962, "matched_fragments": 894, "total_fragments": 1995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 80.4629, "matched_fragments": 853, "total_fragments": 1995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter aminovorans", "strain": "strain=NCTC10684", "accession": "GCA_900445235.1", "taxid": 83263, "species_taxid": 83263, "relation_to_type": "type", "validated": true, "ani": 80.4197, 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