{ "type": "genome", "identifier": "GCF_003012815.1", "organism": "Allosphingosinicella vermicomposti", "title": "Allosphingosinicella vermicomposti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Forestry", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003012815.1", "bioproject": "PRJNA224116", "biosample": "SAMN08707967", "wgs_master": "PXYJ00000000.1", "refseq_category": "reference genome", "taxid": "614671", "species_taxid": "614671", "organism_name": "Allosphingosinicella vermicomposti", "infraspecific_name": "strain=KCTC 22446", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/20", "asm_name": "ASM301281v1", "asm_submitter": "Chinese Academy of Forestry", "gbrs_paired_asm": "GCA_003012815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/012/815/GCF_003012815.1_ASM301281v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2507679", "genome_size_ungapped": "2507679", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003012815.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "2475", "protein_coding_gene_count": "2405", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-20", "dateModified": "2018-03-20", "datePublished": "2018-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Allosphingosinicella vermicomposti" ], "sample_taxid": [ "614671" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Masan" ], "sample_host_location_id": [], "data_size": "0.698 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2507679", "Number of Sequences": "6", "Longest Sequences (bp)": "1212955", "N50 (bp)": "580195", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.4", "Number of CDSs": "2436", "Average Protein Length": "308.2", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingosinicella humi", "strain": "strain=QZX222", "accession": "GCA_003129465.1", "taxid": 2068657, "species_taxid": 2068657, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas colocasiae", "strain": "strain=JCM 31229", "accession": "GCA_019880585.1", "taxid": 1848973, "species_taxid": 1848973, "relation_to_type": "type", "validated": true, "ani": 78.2196, "matched_fragments": 322, "total_fragments": 833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas rhizophila", "strain": "strain=KACC 19189", "accession": "GCA_014396585.1", "taxid": 2071607, "species_taxid": 2071607, "relation_to_type": "type", "validated": true, "ani": 78.1434, "matched_fragments": 219, "total_fragments": 833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginsengisoli An et al. 2013", "strain": "strain=KACC 16858", "accession": "GCA_009363895.1", "taxid": 363835, "species_taxid": 363835, "relation_to_type": "type", "validated": true, "ani": 78.0819, "matched_fragments": 224, "total_fragments": 833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas crusticola", "strain": "strain=MIMD3", "accession": "GCA_003391115.1", "taxid": 1697973, "species_taxid": 1697973, "relation_to_type": "type", "validated": true, "ani": 78.0789, "matched_fragments": 206, "total_fragments": 833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium estronivorans", "strain": "strain=AXB", "accession": "GCA_008692605.1", "taxid": 1577690, "species_taxid": 1577690, "relation_to_type": "type", "validated": true, "ani": 78.0688, "matched_fragments": 236, "total_fragments": 833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium scionense", "strain": "strain=DSM 19371", "accession": "GCA_014197035.1", "taxid": 1404341, "species_taxid": 1404341, "relation_to_type": "type", "validated": true, "ani": 78.0356, "matched_fragments": 262, "total_fragments": 833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium 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"GCA_003967075.1", "taxid": 135719, "species_taxid": 135719, "relation_to_type": "type", "validated": true, "ani": 77.9926, "matched_fragments": 262, "total_fragments": 833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium bisphenolivorans", "strain": "strain=YL23", "accession": "GCA_000412635.1", "taxid": 1335760, "species_taxid": 1335760, "relation_to_type": "type", "validated": true, "ani": 77.9743, "matched_fragments": 221, "total_fragments": 833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium lactosutens", "strain": "strain=DS20", "accession": "GCA_000445105.1", "taxid": 522773, "species_taxid": 522773, "relation_to_type": "type", "validated": true, "ani": 77.9599, "matched_fragments": 221, "total_fragments": 833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium amiense", "strain": "strain=NBRC 102518", "accession": "GCA_001591305.1", "taxid": 135719, "species_taxid": 135719, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019239415.1", "gtdb_species": "s__Allosphingosinicella sp019239415", "ani": 78.2668, "matched_fragments": 306, "total_fragments": 833, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Allosphingosinicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000383095.1", "gtdb_species": "s__Sphingomonas_N sp000383095", "ani": 78.2563, "matched_fragments": 272, "total_fragments": 833, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_N", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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