{
    "type": "genome",
    "identifier": "GCF_003012835.1",
    "organism": "Brevibacillus brevis",
    "title": "Brevibacillus brevis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "NCAUR-ARS-USDA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003012835.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08714134",
        "wgs_master": "PXXZ00000000.1",
        "refseq_category": "na",
        "taxid": "1393",
        "species_taxid": "1393",
        "organism_name": "Brevibacillus brevis",
        "infraspecific_name": "strain=NRRL NRS-604",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/03/20",
        "asm_name": "ASM301283v1",
        "asm_submitter": "NCAUR-ARS-USDA",
        "gbrs_paired_asm": "GCA_003012835.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/012/835/GCF_003012835.1_ASM301283v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6613222",
        "genome_size_ungapped": "6613222",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "97",
        "contig_count": "97",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003012835.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "6465",
        "protein_coding_gene_count": "6241",
        "non_coding_gene_count": "126",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-03-20",
    "dateModified": "2018-03-20",
    "datePublished": "2018-03-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brevibacillus brevis"
        ],
        "sample_taxid": [
            "1393"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Iowa"
        ],
        "sample_host_location_id": [],
        "data_size": "1.891 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6613222",
        "Number of Sequences": "97",
        "Longest Sequences (bp)": "612921",
        "N50 (bp)": "193213",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.4",
        "Number of CDSs": "6369",
        "Average Protein Length": "303.3",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "109",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Brevibacillus brevis",
                "strain": "strain=NRRL NRS-604",
                "accession": "GCA_003012835.1",
                "taxid": 1393,
                "species_taxid": 1393,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2159,
                "total_fragments": 2161,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brevibacillus brevis",
                "strain": "strain=NCTC2611",
                "accession": "GCA_900637055.1",
                "taxid": 1393,
                "species_taxid": 1393,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9973,
                "matched_fragments": 2160,
                "total_fragments": 2161,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brevibacillus brevis",
                "strain": "strain=DSM 30",
                "accession": "GCA_003385915.1",
                "taxid": 1393,
                "species_taxid": 1393,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9929,
                "matched_fragments": 2151,
                "total_fragments": 2161,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brevibacillus brevis",
                "strain": "strain=NBRC 15304",
                "accession": "GCA_006539845.1",
                "taxid": 1393,
                "species_taxid": 1393,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9759,
                "matched_fragments": 2085,
                "total_fragments": 2161,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brevibacillus formosus",
                "strain": "strain=NRRL NRS-863",
                "accession": "GCA_003013405.1",
                "taxid": 54913,
                "species_taxid": 54913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.8082,
                "matched_fragments": 1821,
                "total_fragments": 2161,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus porteri",
                "strain": "strain=NRRL B-41110",
                "accession": "GCA_003013475.1",
                "taxid": 2126350,
                "species_taxid": 2126350,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.5529,
                "matched_fragments": 1803,
                "total_fragments": 2161,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus antibioticus",
                "strain": "strain=TGS2-1",
                "accession": "GCA_005217615.1",
                "taxid": 2570228,
                "species_taxid": 2570228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6995,
                "matched_fragments": 1685,
                "total_fragments": 2161,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus fortis",
                "strain": "strain=NRRL NRS-1210",
                "accession": "GCA_003013395.1",
                "taxid": 2126352,
                "species_taxid": 2126352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.5947,
                "matched_fragments": 1777,
                "total_fragments": 2161,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900637055.1",
                "gtdb_species": "s__Brevibacillus brevis",
                "ani": 99.9973,
                "matched_fragments": 2160,
                "total_fragments": 2161,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.71",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003013405.1",
                "gtdb_species": "s__Brevibacillus formosus",
                "ani": 93.8082,
                "matched_fragments": 1821,
                "total_fragments": 2161,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "95.45",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000282075.1",
                "gtdb_species": "s__Brevibacillus sp000282075",
                "ani": 93.7878,
                "matched_fragments": 1819,
                "total_fragments": 2161,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.13",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001039275.2",
                "gtdb_species": "s__Brevibacillus brevis_C",
                "ani": 93.7861,
                "matched_fragments": 1789,
                "total_fragments": 2161,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.38",
                "min_intra_species_ani": "97.50",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003013475.1",
                "gtdb_species": "s__Brevibacillus porteri",
                "ani": 93.5478,
                "matched_fragments": 1803,
                "total_fragments": 2161,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.63",
                "min_intra_species_ani": "95.52",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_013284355.1",
                "gtdb_species": "s__Brevibacillus sp013284355",
                "ani": 93.1327,
                "matched_fragments": 1800,
                "total_fragments": 2161,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000010165.1",
                "gtdb_species": "s__Brevibacillus brevis_D",
                "ani": 92.757,
                "matched_fragments": 1796,
                "total_fragments": 2161,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.35",
                "min_intra_species_ani": "96.52",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_005217615.1",
                "gtdb_species": "s__Brevibacillus antibioticus",
                "ani": 92.7089,
                "matched_fragments": 1684,
                "total_fragments": 2161,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003013395.1",
                "gtdb_species": "s__Brevibacillus fortis",
                "ani": 92.5783,
                "matched_fragments": 1779,
                "total_fragments": 2161,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.477,
        "doubling_h": 0.285,
        "growth_tmp": 32.5,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.25,
        "genome_size": 6388389.462,
        "gc_content": 47.186,
        "coding_genes": 5857.2,
        "rRNA16S_genes": 15.0,
        "tRNA_genes": 126.75,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Brevibacillus",
        "brevis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}