{ "type": "genome", "identifier": "GCF_003014485.1", "organism": "Murinocardiopsis flavida", "title": "Murinocardiopsis flavida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003014485.1", "bioproject": "PRJNA224116", "biosample": "SAMN07621480", "wgs_master": "PYGA00000000.1", "refseq_category": "reference genome", "taxid": "645275", "species_taxid": "645275", "organism_name": "Murinocardiopsis flavida", "infraspecific_name": "strain=DSM 45312", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/23", "asm_name": "ASM301448v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003014485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/014/485/GCF_003014485.1_ASM301448v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7376154", "genome_size_ungapped": "7375937", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "75", "contig_count": "75", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003014485.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "6652", "protein_coding_gene_count": "6528", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-23", "dateModified": "2018-03-23", "datePublished": "2018-03-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Murinocardiopsis flavida" ], "sample_taxid": [ "645275" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", "accession": "GCA_004323735.1", "taxid": 2498135, "species_taxid": 2498135, "relation_to_type": "type", "validated": true, "ani": 79.4466, "matched_fragments": 967, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora alba", "strain": "strain=YIM 90003", "accession": "GCA_000826685.1", "taxid": 183763, "species_taxid": 183763, "relation_to_type": "type", "validated": true, "ani": 79.4284, "matched_fragments": 942, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=YIM 90462", "accession": "GCA_001660385.1", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 79.4146, "matched_fragments": 800, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", "accession": "GCA_003574835.2", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 79.413, "matched_fragments": 809, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis potens", "strain": "strain=DSM 45234", "accession": "GCA_000341105.1", "taxid": 1246458, "species_taxid": 1246458, "relation_to_type": "type", "validated": true, "ani": 79.3444, "matched_fragments": 1082, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis composta", "strain": "strain=DSM 44551", "accession": "GCA_014200805.1", "taxid": 157465, "species_taxid": 157465, "relation_to_type": "type", "validated": true, "ani": 79.3124, "matched_fragments": 1148, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=ATCC 23218", "accession": "GCA_012396345.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 79.233, "matched_fragments": 896, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. dassonvillei", "strain": "strain=DSM 43111", "accession": "GCA_000092985.1", "taxid": 568208, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 79.1664, "matched_fragments": 922, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=NCTC10488", "accession": "GCA_900638215.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 79.1077, "matched_fragments": 929, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 79.0562, "matched_fragments": 847, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis deserti", "strain": "strain=H13", "accession": "GCA_008638355.1", "taxid": 2605988, "species_taxid": 2605988, "relation_to_type": "type", "validated": true, "ani": 79.0485, "matched_fragments": 930, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis halotolerans", "strain": "strain=DSM 44410", "accession": "GCA_000341065.1", "taxid": 124252, "species_taxid": 124252, "relation_to_type": "type", "validated": true, "ani": 78.8903, "matched_fragments": 792, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis lucentensis", "strain": "strain=DSM 44048", "accession": "GCA_000341125.1", "taxid": 53441, "species_taxid": 53441, "relation_to_type": "type", "validated": true, "ani": 78.8058, "matched_fragments": 673, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis flavescens", "strain": "strain=CGMCC 4.5723", "accession": "GCA_900141985.1", "taxid": 758803, "species_taxid": 758803, "relation_to_type": "type", "validated": true, "ani": 78.7851, "matched_fragments": 974, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 78.7482, "matched_fragments": 837, "total_fragments": 2425, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis metallicus", "strain": "strain=DSM 44598", "accession": "GCA_014201115.1", "taxid": 179819, "species_taxid": 179819, "relation_to_type": "type", "validated": true, 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