{ "type": "genome", "identifier": "GCF_003014535.1", "organism": "Taibaiella chishuiensis", "title": "Taibaiella chishuiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003014535.1", "bioproject": "PRJNA224116", "biosample": "SAMN06297156", "wgs_master": "PYGD00000000.1", "refseq_category": "reference genome", "taxid": "1434707", "species_taxid": "1434707", "organism_name": "Taibaiella chishuiensis", "infraspecific_name": "strain=CGMCC 1.12700", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/23", "asm_name": "ASM301453v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003014535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/014/535/GCF_003014535.1_ASM301453v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5841105", "genome_size_ungapped": "5840334", "gc_percent": "50.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003014535.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4905", "protein_coding_gene_count": "4833", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-23", "dateModified": "2018-03-23", "datePublished": "2018-03-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Taibaiella chishuiensis" ], "sample_taxid": [ "1434707" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.649 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5841105", "Number of Sequences": "24", "Longest Sequences (bp)": "1781507", "N50 (bp)": "400323", "Gap Ratio (%)": "0.013200", "GCcontent (%)": "50.1", "Number of CDSs": "4835", "Average Protein Length": "347.1", "Coding Ratio (%)": "86.2", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Taibaiella chishuiensis", "strain": "strain=CGMCC 1.12700", "accession": "GCA_003014535.1", "taxid": 1434707, "species_taxid": 1434707, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1930, 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"strain=G-6-1-13", "accession": "GCA_012927205.1", "taxid": 2728842, "species_taxid": 2728842, "relation_to_type": "type", "validated": true, "ani": 76.1861, "matched_fragments": 79, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga qingshengii", "strain": "strain=JCM 30026", "accession": "GCA_014529935.1", "taxid": 1569794, "species_taxid": 1569794, "relation_to_type": "type", "validated": true, "ani": 76.1716, "matched_fragments": 81, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deminuibacter soli", "strain": "strain=K23C18032701", "accession": "GCA_003412455.1", "taxid": 2291815, "species_taxid": 2291815, "relation_to_type": "type", "validated": true, "ani": 75.7702, "matched_fragments": 77, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": 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