{ "type": "genome", "identifier": "GCF_003014555.1", "organism": "Haloactinopolyspora alba", "title": "Haloactinopolyspora alba", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003014555.1", "bioproject": "PRJNA224116", "biosample": "SAMN07621254", "wgs_master": "PYGE00000000.1", "refseq_category": "na", "taxid": "648780", "species_taxid": "648780", "organism_name": "Haloactinopolyspora alba", "infraspecific_name": "strain=DSM 45211", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/23", "asm_name": "ASM301455v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003014555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/014/555/GCF_003014555.1_ASM301455v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5535374", "genome_size_ungapped": "5535374", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003014555.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "5195", "protein_coding_gene_count": "5122", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-23", "dateModified": "2018-03-23", "datePublished": "2018-03-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Haloactinopolyspora alba" ], "sample_taxid": [ "648780" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.485 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5535374", "Number of Sequences": "49", "Longest Sequences (bp)": "605293", "N50 (bp)": "228420", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "5182", "Average Protein Length": "322.9", "Coding Ratio (%)": "90.7", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Haloactinopolyspora alba", "strain": "strain=DSM 45211", "accession": "GCA_003014555.1", "taxid": 648780, "species_taxid": 648780, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1817, "total_fragments": 1822, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Haloactinopolyspora alba", "strain": "strain=YIM 93246", "accession": "GCA_004138525.1", "taxid": 648780, "species_taxid": 648780, "relation_to_type": "type", "validated": true, "ani": 99.9954, "matched_fragments": 1808, "total_fragments": 1822, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Jiangella rhizosphaerae", "strain": "strain=NEAU-YY265", "accession": "GCA_003579925.1", "taxid": 2293569, "species_taxid": 2293569, "relation_to_type": "type", "validated": true, "ani": 80.6406, "matched_fragments": 918, "total_fragments": 1822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella gansuensis", "strain": "strain=DSM 44835", "accession": "GCA_000515395.1", "taxid": 281473, "species_taxid": 281473, "relation_to_type": "type", "validated": true, "ani": 80.4181, "matched_fragments": 901, "total_fragments": 1822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=YIM 61503", "accession": "GCA_001708125.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 80.28, "matched_fragments": 1017, "total_fragments": 1822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=DSM 45237", "accession": "GCA_900106035.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 80.2755, "matched_fragments": 1015, "total_fragments": 1822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella anatolica", "strain": "strain=GTF31", "accession": "GCA_003236295.1", "taxid": 2670374, "species_taxid": 2670374, "relation_to_type": "type", "validated": true, "ani": 80.2599, "matched_fragments": 968, "total_fragments": 1822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella mangrovi", "strain": "strain=DSM 102122", "accession": "GCA_014204975.1", "taxid": 1524084, "species_taxid": 1524084, "relation_to_type": "type", "validated": true, "ani": 80.1863, "matched_fragments": 963, "total_fragments": 1822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella muralis", "strain": "strain=DSM 45357", "accession": "GCA_001270745.1", "taxid": 702383, "species_taxid": 702383, "relation_to_type": "type", "validated": true, "ani": 80.1499, "matched_fragments": 990, "total_fragments": 1822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella endophytica", "strain": "strain=KE2-3", "accession": "GCA_003427025.1", "taxid": 1623398, "species_taxid": 1623398, "relation_to_type": "type", "validated": true, "ani": 80.1493, "matched_fragments": 992, "total_fragments": 1822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium kibberense", "strain": "strain=DSM 17687", "accession": "GCA_006519705.1", "taxid": 282060, 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