{
    "type": "genome",
    "identifier": "GCF_003014655.1",
    "organism": "Planomicrobium soli",
    "title": "Planomicrobium soli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003014655.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06297176",
        "wgs_master": "PYAT00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1176648",
        "species_taxid": "1176648",
        "organism_name": "Planomicrobium soli",
        "infraspecific_name": "strain=CGMCC 1.12259",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/03/23",
        "asm_name": "ASM301465v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_003014655.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/014/655/GCF_003014655.1_ASM301465v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3592970",
        "genome_size_ungapped": "3592752",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "35",
        "contig_count": "35",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003014655.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "3540",
        "protein_coding_gene_count": "3450",
        "non_coding_gene_count": "73",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-03-23",
    "dateModified": "2018-03-23",
    "datePublished": "2018-03-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Planomicrobium soli"
        ],
        "sample_taxid": [
            "1176648"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.023 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3592970",
        "Number of Sequences": "35",
        "Longest Sequences (bp)": "459826",
        "N50 (bp)": "290363",
        "Gap Ratio (%)": "0.006067",
        "GCcontent (%)": "43.4",
        "Number of CDSs": "3476",
        "Average Protein Length": "296.7",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "5",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Planococcus glaciei",
                "strain": "strain=CGMCC 1.6846",
                "accession": "GCA_900099655.1",
                "taxid": 459472,
                "species_taxid": 459472,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.363,
                "matched_fragments": 388,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus massiliensis",
                "strain": "strain=ES2",
                "accession": "GCA_000821325.2",
                "taxid": 1499687,
                "species_taxid": 1499687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3047,
                "matched_fragments": 338,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus koreensis",
                "strain": "strain=10704",
                "accession": "GCA_004761975.1",
                "taxid": 112331,
                "species_taxid": 112331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0847,
                "matched_fragments": 315,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus ruber",
                "strain": "strain=CGMCC 1.19134",
                "accession": "GCA_022819085.1",
                "taxid": 2027871,
                "species_taxid": 2027871,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0164,
                "matched_fragments": 344,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus soli",
                "strain": "strain=c23",
                "accession": "GCA_016881065.1",
                "taxid": 2666072,
                "species_taxid": 2666072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0109,
                "matched_fragments": 335,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus koreensis",
                "strain": "strain=DSM 15895",
                "accession": "GCA_014202615.1",
                "taxid": 112331,
                "species_taxid": 112331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9869,
                "matched_fragments": 324,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus wigleyi",
                "strain": "strain=Sa1BUA13",
                "accession": "GCA_014836985.1",
                "taxid": 2762216,
                "species_taxid": 2762216,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9274,
                "matched_fragments": 327,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus antarcticus",
                "strain": "strain=DSM 14505",
                "accession": "GCA_001687565.2",
                "taxid": 161360,
                "species_taxid": 161360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8265,
                "matched_fragments": 276,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus faecalis",
                "strain": "strain=AJ003",
                "accession": "GCA_002009235.1",
                "taxid": 1598147,
                "species_taxid": 1598147,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7486,
                "matched_fragments": 254,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus antarcticus",
                "strain": "strain=DSM 14505",
                "accession": "GCA_000264415.1",
                "taxid": 161360,
                "species_taxid": 161360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7075,
                "matched_fragments": 266,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus faecalis",
                "strain": "strain=CECT 8759",
                "accession": "GCA_001856115.1",
                "taxid": 1598147,
                "species_taxid": 1598147,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.6819,
                "matched_fragments": 244,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus salinus",
                "strain": "strain=LCB217",
                "accession": "GCA_003719725.1",
                "taxid": 1848460,
                "species_taxid": 1848460,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4029,
                "matched_fragments": 262,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus maritimus",
                "strain": "strain=DSM 17275",
                "accession": "GCA_001687625.2",
                "taxid": 192421,
                "species_taxid": 192421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2568,
                "matched_fragments": 220,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenisporosarcina indica",
                "strain": "strain=PN2",
                "accession": "GCA_001939075.1",
                "taxid": 650093,
                "species_taxid": 650093,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0521,
                "matched_fragments": 65,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003014655.1",
                "gtdb_species": "s__Planococcus soli_A",
                "ani": 100.0,
                "matched_fragments": 1177,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_007859275.1",
                "gtdb_species": "s__Planococcus sp007859275",
                "ani": 82.9879,
                "matched_fragments": 845,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007859395.1",
                "gtdb_species": "s__Planococcus sp007859395",
                "ani": 82.6595,
                "matched_fragments": 797,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900099655.1",
                "gtdb_species": "s__Planococcus glaciei",
                "ani": 79.3535,
                "matched_fragments": 388,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.05",
                "min_intra_species_ani": "96.92",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000821325.1",
                "gtdb_species": "s__Planococcus massiliensis",
                "ani": 79.3025,
                "matched_fragments": 337,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004761975.1",
                "gtdb_species": "s__Planococcus koreensis",
                "ani": 79.0665,
                "matched_fragments": 315,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016908095.1",
                "gtdb_species": "s__Planococcus chinensis",
                "ani": 79.0121,
                "matched_fragments": 342,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018613575.1",
                "gtdb_species": "s__Planococcus sp018613575",
                "ani": 78.9374,
                "matched_fragments": 310,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014836985.1",
                "gtdb_species": "s__Planococcus sp014836985",
                "ani": 78.9354,
                "matched_fragments": 326,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.16",
                "min_intra_species_ani": "97.16",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001687565.2",
                "gtdb_species": "s__Planococcus antarcticus",
                "ani": 78.8494,
                "matched_fragments": 275,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.42",
                "min_intra_species_ani": "99.42",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007859295.1",
                "gtdb_species": "s__Planococcus sp007859295",
                "ani": 78.8103,
                "matched_fragments": 338,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003668635.1",
                "gtdb_species": "s__Planococcus sp003668635",
                "ani": 78.8012,
                "matched_fragments": 296,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001687625.2",
                "gtdb_species": "s__Planococcus maritimus",
                "ani": 78.2656,
                "matched_fragments": 220,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.254,
        "cell_length": 0.026,
        "doubling_h": null,
        "growth_tmp": 25.555,
        "optimum_tmp": 25.916,
        "optimum_ph": 7.433,
        "genome_size": 3592970.0,
        "gc_content": 46.997,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 1.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Planomicrobium",
        "soli"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}