{ "type": "genome", "identifier": "GCF_003015185.1", "organism": "Ahniella affigens", "title": "Ahniella affigens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dankook University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003015185.1", "bioproject": "PRJNA224116", "biosample": "SAMN08714471", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2021234", "species_taxid": "2021234", "organism_name": "Ahniella affigens", "infraspecific_name": "strain=D13", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/26", "asm_name": "ASM301518v1", "asm_submitter": "Dankook University", "gbrs_paired_asm": "GCA_003015185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/015/185/GCF_003015185.1_ASM301518v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6120935", "genome_size_ungapped": "6120935", "gc_percent": "60.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003015185.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4659", "protein_coding_gene_count": "4562", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-26", "dateModified": "2018-03-26", "datePublished": "2018-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Ahniella affigens" ], "sample_taxid": [ "2021234" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Shnan-gun" ], "sample_host_location_id": [], "data_size": "1.710 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6120935", "Number of Sequences": "2", "Longest Sequences (bp)": "5971549", "N50 (bp)": "5971549", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.4", "Number of CDSs": "4699", "Average Protein Length": "372.1", "Coding Ratio (%)": "85.7", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ahniella affigens", "strain": "strain=D13", "accession": "GCA_003015185.1", "taxid": 2021234, "species_taxid": 2021234, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2039, "total_fragments": 2039, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter gilvus", "strain": "strain=HX-5-24", "accession": "GCA_009740395.1", "taxid": 2682097, "species_taxid": 2682097, "relation_to_type": "type", "validated": true, "ani": 77.4435, "matched_fragments": 111, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas fraxinea", "strain": "strain=D4P002", "accession": "GCA_021233355.1", "taxid": 2901869, "species_taxid": 2901869, "relation_to_type": "type", "validated": true, "ani": 77.3402, "matched_fragments": 120, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter niastensis", "strain": "strain=DSM 18481", "accession": "GCA_015453285.1", "taxid": 380629, "species_taxid": 380629, "relation_to_type": "type", "validated": true, "ani": 77.2012, "matched_fragments": 130, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella japonica", "strain": "strain=DSM 16301", "accession": "GCA_001010355.1", "taxid": 231455, "species_taxid": 231455, "relation_to_type": "type", "validated": true, "ani": 77.0977, "matched_fragments": 81, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas terricola", "strain": "strain=BZ92r", "accession": "GCA_004352845.1", "taxid": 645597, "species_taxid": 645597, "relation_to_type": "type", "validated": true, "ani": 77.0889, "matched_fragments": 92, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella acidiphila", "strain": "strain=7MK23", "accession": "GCA_014863405.1", "taxid": 2775866, "species_taxid": 2775866, "relation_to_type": "type", "validated": true, "ani": 77.0832, "matched_fragments": 110, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter antibioticus", "strain": "strain=ATCC 29479", "accession": "GCA_001442535.1", "taxid": 84531, "species_taxid": 84531, "relation_to_type": "type", "validated": true, "ani": 77.0812, "matched_fragments": 141, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 77.0804, "matched_fragments": 100, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas terricola", "strain": "strain=CGMCC 1.8985", "accession": "GCA_014645675.1", "taxid": 645597, "species_taxid": 645597, "relation_to_type": "type", "validated": true, "ani": 77.0791, "matched_fragments": 94, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria terrea", "strain": "strain=DSM 26515", "accession": "GCA_900109025.1", "taxid": 529704, "species_taxid": 529704, "relation_to_type": "type", "validated": true, "ani": 77.0467, 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"status": "below_threshold" }, { "organism_name": "Luteibacter anthropi", "strain": "strain=CCUG 25036", "accession": "GCA_011759365.1", "taxid": 564369, "species_taxid": 564369, "relation_to_type": "type", "validated": true, "ani": 76.8846, "matched_fragments": 88, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tahibacter caeni", "strain": "strain=BUT-6", "accession": "GCA_024609805.1", "taxid": 1453545, "species_taxid": 1453545, "relation_to_type": "type", "validated": true, "ani": 76.8489, "matched_fragments": 176, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=TR7-09", "accession": "GCA_000747175.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 76.8401, "matched_fragments": 134, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter 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"matched_fragments": 132, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter fulvus", "strain": "strain=Jip2", "accession": "GCA_000264315.1", "taxid": 219571, "species_taxid": 219571, "relation_to_type": "type", "validated": true, "ani": 76.2769, "matched_fragments": 99, "total_fragments": 2039, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003015185.1", "gtdb_species": "s__Ahniella affigens", "ani": 100.0, "matched_fragments": 2039, "total_fragments": 2039, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Ahniellaceae;g__Ahniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { 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