{ "type": "genome", "identifier": "GCF_003015205.1", "organism": "Campylobacter blaseri", "title": "Campylobacter blaseri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Utrecht University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003015205.1", "bioproject": "PRJNA224116", "biosample": "SAMN07739585", "wgs_master": "PDHH00000000.1", "refseq_category": "na", "taxid": "2042961", "species_taxid": "2042961", "organism_name": "Campylobacter blaseri", "infraspecific_name": "strain=17S00004-5", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/26", "asm_name": "ASM301520v1", "asm_submitter": "Utrecht University", "gbrs_paired_asm": "GCA_003015205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/015/205/GCF_003015205.1_ASM301520v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1869677", "genome_size_ungapped": "1869077", "gc_percent": "29.000000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003015205.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "1887", "protein_coding_gene_count": "1814", "non_coding_gene_count": "48", "pubmed_id": "29624164" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-26", "dateModified": "2018-03-26", "datePublished": "2018-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacter blaseri" ], "sample_taxid": [ "2042961" ], "sample_host_organism": [ "Phoca vitulina" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Netherlands: Pieterburen" ], "sample_host_location_id": [], "data_size": "0.507 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1869677", "Number of Sequences": "30", "Longest Sequences (bp)": "356980", "N50 (bp)": "231901", "Gap Ratio (%)": "0.032091", "GCcontent (%)": "29.2", "Number of CDSs": "1839", "Average Protein Length": "305.3", "Coding Ratio (%)": "90.1", "Number of rRNAs": "1", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter blaseri", "strain": "strain=17S00004-5", "accession": "GCA_003015205.1", "taxid": 2042961, "species_taxid": 2042961, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 613, "total_fragments": 614, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter blaseri", "strain": "strain=LMG 30333", "accession": "GCA_013201895.1", "taxid": 2042961, "species_taxid": 2042961, "relation_to_type": "type", "validated": true, "ani": 99.9975, "matched_fragments": 613, "total_fragments": 614, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter corcagiensis", "strain": "strain=CIT 045", "accession": "GCA_000597805.1", "taxid": 1448857, "species_taxid": 1448857, "relation_to_type": "type", "validated": true, "ani": 77.4549, "matched_fragments": 159, "total_fragments": 614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter corcagiensis", "strain": "strain=LMG 27932", "accession": "GCA_013201645.1", "taxid": 1448857, "species_taxid": 1448857, "relation_to_type": "type", "validated": true, "ani": 77.4478, "matched_fragments": 160, "total_fragments": 614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter portucalensis", "strain": "strain=FMV-PI01", "accession": "GCA_009690845.1", "taxid": 2608384, "species_taxid": 2608384, "relation_to_type": "type", "validated": true, "ani": 77.3838, "matched_fragments": 172, "total_fragments": 614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter ureolyticus", "strain": "strain=FDAARGOS_1102", "accession": "GCA_016766895.1", "taxid": 827, "species_taxid": 827, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3666, "matched_fragments": 189, "total_fragments": 614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter geochelonis", "strain": "strain=LMG 29375", "accession": "GCA_013201685.1", "taxid": 1780362, "species_taxid": 1780362, "relation_to_type": "type", "validated": true, "ani": 77.349, "matched_fragments": 160, "total_fragments": 614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter 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"strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013201895.1", "gtdb_species": "s__Campylobacter_B blaseri", "ani": 99.9975, "matched_fragments": 613, "total_fragments": 614, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_002021925.1", "gtdb_species": "s__Campylobacter_A pinnipediorum", "ani": 78.8735, "matched_fragments": 118, "total_fragments": 614, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", "min_intra_species_ani": "97.81", "mean_intra_species_af": "0.98", "min_intra_species_af": 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"num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013201685.1", "gtdb_species": "s__Campylobacter_B geochelonis", "ani": 77.367, "matched_fragments": 159, "total_fragments": 614, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.40", "min_intra_species_ani": "99.12", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_009690845.1", "gtdb_species": "s__Campylobacter_B portucalensis", "ani": 77.3658, "matched_fragments": 173, "total_fragments": 614, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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