{
    "type": "genome",
    "identifier": "GCF_003019675.1",
    "organism": "Fusobacterium ulcerans",
    "title": "Fusobacterium ulcerans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Virginia Tech",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003019675.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08501141",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "861",
        "species_taxid": "861",
        "organism_name": "Fusobacterium ulcerans",
        "infraspecific_name": "strain=ATCC 49185",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/03/26",
        "asm_name": "ASM301967v1",
        "asm_submitter": "Virginia Tech",
        "gbrs_paired_asm": "GCA_003019675.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/019/675/GCF_003019675.1_ASM301967v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3537675",
        "genome_size_ungapped": "3537675",
        "gc_percent": "30.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003019675.1-RS_2024_04_27",
        "annotation_date": "2024-04-27",
        "total_gene_count": "3309",
        "protein_coding_gene_count": "3209",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-03-26",
    "dateModified": "2018-03-26",
    "datePublished": "2018-03-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fusobacterium ulcerans"
        ],
        "sample_taxid": [
            "861"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.955 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3537675",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3537675",
        "N50 (bp)": "3537675",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.5",
        "Number of CDSs": "3245",
        "Average Protein Length": "322.4",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "22",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Fusobacterium ulcerans",
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                "accession": "GCA_003019675.1",
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                "species_taxid": 861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1176,
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                "status": "conclusive"
            },
            {
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.97,
                "matched_fragments": 1151,
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                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium varium",
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                "species_taxid": 856,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium necrogenes",
                "strain": "strain=NCTC10723",
                "accession": "GCA_900450765.1",
                "taxid": 858,
                "species_taxid": 858,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0405,
                "matched_fragments": 256,
                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium massiliense",
                "strain": "strain=Marseille-P2749",
                "accession": "GCA_900095705.1",
                "taxid": 1852365,
                "species_taxid": 1852365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5745,
                "matched_fragments": 121,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium nucleatum subsp. polymorphum",
                "strain": "strain=NCTC10562",
                "accession": "GCA_001457555.1",
                "taxid": 76857,
                "species_taxid": 851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3927,
                "matched_fragments": 161,
                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium hwasookii",
                "strain": "strain=KCOM 1249",
                "accession": "GCA_014217355.1",
                "taxid": 1583098,
                "species_taxid": 1583098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0766,
                "matched_fragments": 173,
                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cetobacterium ceti",
                "strain": "strain=ATCC 700028",
                "accession": "GCA_900167275.1",
                "taxid": 180163,
                "species_taxid": 180163,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium perfoetens",
                "strain": "strain=ATCC 29250",
                "accession": "GCA_000622245.1",
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                "species_taxid": 852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6885,
                "matched_fragments": 224,
                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium nucleatum subsp. polymorphum",
                "strain": "strain=ATCC 10953",
                "accession": "GCA_000153625.1",
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                "species_taxid": 851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6535,
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                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium hwasookii",
                "strain": "strain=ChDC F128",
                "accession": "GCA_000292935.1",
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                "relation_to_type": "type",
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                "ani": 76.4689,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanivirga miroungae",
                "strain": "strain=ES3154-GLU",
                "accession": "GCA_902505095.1",
                "taxid": 1130046,
                "species_taxid": 1130046,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3134,
                "matched_fragments": 55,
                "total_fragments": 1179,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_003019675.1",
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                "total_fragments": 1179,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
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            {
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
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        ]
    },
    "_bac2feature": {
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}