{ "type": "genome", "identifier": "GCF_003020585.1", "organism": "Chryseobacterium aurantiacum", "title": "Chryseobacterium aurantiacum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fujian Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003020585.1", "bioproject": "PRJNA224116", "biosample": "SAMN08685503", "wgs_master": "PXUE00000000.1", "refseq_category": "reference genome", "taxid": "2116499", "species_taxid": "2116499", "organism_name": "Chryseobacterium aurantiacum", "infraspecific_name": "strain=F30", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/27", "asm_name": "ASM302058v1", "asm_submitter": "Fujian Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_003020585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/020/585/GCF_003020585.1_ASM302058v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4615988", "genome_size_ungapped": "4615988", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003020585.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4172", "protein_coding_gene_count": "4085", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-27", "dateModified": "2018-03-27", "datePublished": "2018-03-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium aurantiacum" ], "sample_taxid": [ "2116499" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yueqing City, Zhejiang Province" ], "sample_host_location_id": [], "data_size": "1.291 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4615988", "Number of Sequences": "15", "Longest Sequences (bp)": "1462563", "N50 (bp)": "1286364", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.8", "Number of CDSs": "4037", "Average Protein Length": "332.4", "Coding Ratio (%)": "87.2", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium aurantiacum", "strain": "strain=F30", "accession": "GCA_003020585.1", "taxid": 2116499, 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"type", "validated": true, "ani": 91.1426, "matched_fragments": 1316, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium artocarpi", "strain": "strain=UTM-3", "accession": "GCA_001684975.1", "taxid": 1414727, "species_taxid": 1414727, "relation_to_type": "type", "validated": true, "ani": 84.21, "matched_fragments": 1092, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ureilyticum", "strain": "strain=DSM 18017", "accession": "GCA_900156735.1", "taxid": 373668, "species_taxid": 373668, "relation_to_type": "type", "validated": true, "ani": 84.1699, "matched_fragments": 1157, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium jejuense", "strain": "strain=DSM 19299", "accession": "GCA_900100075.1", "taxid": 445960, "species_taxid": 445960, "relation_to_type": "type", "validated": true, "ani": 84.0793, "matched_fragments": 1155, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium panacisoli", "strain": "strain=Gsoil 183", "accession": "GCA_008274625.1", "taxid": 1807141, "species_taxid": 1807141, "relation_to_type": "type", "validated": true, "ani": 83.4864, "matched_fragments": 1045, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizosphaerae", "strain": "strain=KCTC 22548", "accession": "GCA_003385455.1", "taxid": 395937, "species_taxid": 395937, "relation_to_type": "type", "validated": true, "ani": 82.9916, "matched_fragments": 1034, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.5844, "matched_fragments": 661, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.4666, "matched_fragments": 692, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.3603, "matched_fragments": 679, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 79.5531, "matched_fragments": 566, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.2222, "matched_fragments": 515, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003020585.1", "gtdb_species": "s__Chryseobacterium aurantiacum", "ani": 100.0, "matched_fragments": 1531, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": 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