{ "type": "genome", "identifier": "GCF_003024235.1", "organism": "Arenimonas caeni", "title": "Arenimonas caeni", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Anhui Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003024235.1", "bioproject": "PRJNA224116", "biosample": "SAMN08628741", "wgs_master": "PVLF00000000.1", "refseq_category": "reference genome", "taxid": "2058085", "species_taxid": "2058085", "organism_name": "Arenimonas caeni", "infraspecific_name": "strain=z29", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/08", "asm_name": "ASM302423v1", "asm_submitter": "Anhui Normal University", "gbrs_paired_asm": "GCA_003024235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/024/235/GCF_003024235.1_ASM302423v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2954299", "genome_size_ungapped": "2954288", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003024235.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "2809", "protein_coding_gene_count": "2719", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-08", "dateModified": "2018-03-08", "datePublished": "2018-03-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Arenimonas caeni" ], "sample_taxid": [ "2058085" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Wuhu City, Anhui Province" ], "sample_host_location_id": [], "data_size": "0.791 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 30.0, "max": 30.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2954299", "Number of Sequences": "42", "Longest Sequences (bp)": "552556", "N50 (bp)": "171454", "Gap Ratio (%)": "0.000372", "GCcontent (%)": "70.2", "Number of CDSs": "2753", "Average Protein Length": "330.9", "Coding Ratio (%)": "92.5", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arenimonas caeni", "strain": "strain=z29", "accession": "GCA_003024235.1", "taxid": 2058085, "species_taxid": 2058085, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 969, "total_fragments": 969, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arenimonas malthae", "strain": "strain=CC-JY-1", "accession": "GCA_000747075.1", "taxid": 354197, "species_taxid": 354197, "relation_to_type": "type", "validated": true, "ani": 88.2654, "matched_fragments": 705, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas soli", "strain": "strain=CGMCC 1.15905", "accession": "GCA_014643775.1", "taxid": 2269504, "species_taxid": 2269504, "relation_to_type": "type", "validated": true, "ani": 86.8568, "matched_fragments": 739, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas metalli", "strain": "strain=CF5-1", "accession": "GCA_000747155.1", "taxid": 948077, "species_taxid": 948077, "relation_to_type": "type", "validated": true, "ani": 86.4988, "matched_fragments": 722, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas donghaensis", "strain": "strain=HO3-R19", "accession": "GCA_000743535.1", "taxid": 375061, "species_taxid": 375061, "relation_to_type": "type", "validated": true, "ani": 86.1929, "matched_fragments": 729, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas terrae", "strain": "strain=R29", "accession": "GCA_006265115.1", "taxid": 2546226, "species_taxid": 2546226, "relation_to_type": "type", "validated": true, "ani": 85.7013, "matched_fragments": 704, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas fontis", "strain": "strain=3729k", "accession": "GCA_008386465.1", "taxid": 2608255, "species_taxid": 2608255, "relation_to_type": "type", "validated": true, "ani": 83.8112, "matched_fragments": 663, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=DSM 18010", "accession": "GCA_000426365.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 83.3235, "matched_fragments": 665, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 81.1059, "matched_fragments": 478, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 80.9387, "matched_fragments": 577, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, 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