{ "type": "genome", "identifier": "GCF_003024515.2", "organism": "Acinetobacter sichuanensis", "title": "Acinetobacter sichuanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "West China Hospital, Sichuan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003024515.2", "bioproject": "PRJNA224116", "biosample": "SAMN08772518", "wgs_master": "PYIX00000000.2", "refseq_category": "reference genome", "taxid": "2136183", "species_taxid": "2136183", "organism_name": "Acinetobacter sichuanensis", "infraspecific_name": "strain=WCHAc060041", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/19", "asm_name": "ASM302451v2", "asm_submitter": "West China Hospital, Sichuan University", "gbrs_paired_asm": "GCA_003024515.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/024/515/GCF_003024515.2_ASM302451v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4666610", "genome_size_ungapped": "4666610", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "233", "contig_count": "233", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003024515.2-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4645", "protein_coding_gene_count": "4392", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-19", "dateModified": "2018-08-19", "datePublished": "2018-08-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter sichuanensis" ], "sample_taxid": [ "2136183" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Chengdu, Sichuan" ], "sample_host_location_id": [], "data_size": "1.318 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4666610", "Number of Sequences": "233", "Longest Sequences (bp)": "299895", "N50 (bp)": "84630", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.0", "Number of CDSs": "4394", "Average Protein Length": "295.5", "Coding Ratio (%)": "83.5", "Number of rRNAs": "3", "Number of tRNAs": "74", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, 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"type", "validated": true, "ani": 82.3924, "matched_fragments": 691, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 81.9146, "matched_fragments": 680, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter piscicola", "strain": "strain=LW15", "accession": "GCA_002233755.1", "taxid": 2006115, "species_taxid": 2006115, "relation_to_type": "type", "validated": true, "ani": 81.3593, "matched_fragments": 622, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 80.9938, "matched_fragments": 660, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CCUG 2491", "accession": "GCA_008802215.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 80.9315, "matched_fragments": 665, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 80.3999, "matched_fragments": 551, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0264, "matched_fragments": 445, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter stercoris", "strain": "strain=KPC-SM-21", "accession": "GCA_900323515.1", "taxid": 2126983, "species_taxid": 2126983, "relation_to_type": "type", "validated": true, "ani": 79.6468, "matched_fragments": 436, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 79.6347, "matched_fragments": 336, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tjernbergiae", "strain": "strain=DSM 14971", "accession": "GCA_000374425.1", "taxid": 202955, "species_taxid": 202955, "relation_to_type": "type", "validated": true, "ani": 79.458, "matched_fragments": 417, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tjernbergiae", "strain": "strain=DSM 14971", "accession": "GCA_000759995.1", "taxid": 202955, "species_taxid": 202955, "relation_to_type": "type", "validated": true, "ani": 79.4267, "matched_fragments": 413, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tjernbergiae", "strain": "strain=CIP 107465", "accession": "GCA_000488175.1", "taxid": 202955, "species_taxid": 202955, "relation_to_type": "type", "validated": true, "ani": 79.4051, "matched_fragments": 417, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter colistiniresistens", "strain": "strain=NIPH 2036", "accession": "GCA_000413935.1", "taxid": 280145, "species_taxid": 280145, "relation_to_type": "type", "validated": true, "ani": 79.4037, "matched_fragments": 371, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 79.0501, "matched_fragments": 379, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 79.0263, "matched_fragments": 378, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003024515.2", "gtdb_species": "s__Acinetobacter sichuanensis", "ani": 100.0, "matched_fragments": 1443, "total_fragments": 1447, "gtdb_taxonomy": 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