{
    "type": "genome",
    "identifier": "GCF_003026355.1",
    "organism": "Photobacterium kishitanii",
    "title": "Photobacterium kishitanii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "FDA/CFSAN",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003026355.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07327725",
        "wgs_master": "PYON00000000.1",
        "refseq_category": "na",
        "taxid": "318456",
        "species_taxid": "318456",
        "organism_name": "Photobacterium kishitanii",
        "infraspecific_name": "strain=ATCC BAA-1194",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/03/31",
        "asm_name": "ASM302635v1",
        "asm_submitter": "FDA/CFSAN",
        "gbrs_paired_asm": "GCA_003026355.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/026/355/GCF_003026355.1_ASM302635v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4732354",
        "genome_size_ungapped": "4732354",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "59",
        "contig_count": "59",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-29",
        "total_gene_count": "4289",
        "protein_coding_gene_count": "4081",
        "non_coding_gene_count": "181",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-03-31",
    "dateModified": "2018-03-31",
    "datePublished": "2018-03-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Photobacterium kishitanii"
        ],
        "sample_taxid": [
            "318456"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "missing"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.340 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4732354",
        "Number of Sequences": "59",
        "Longest Sequences (bp)": "492509",
        "N50 (bp)": "226404",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.1",
        "Number of CDSs": "4135",
        "Average Protein Length": "322.4",
        "Coding Ratio (%)": "84.5",
        "Number of rRNAs": "4",
        "Number of tRNAs": "155",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Photobacterium kishitanii",
                "strain": "strain=ATCC:BAA-1194",
                "accession": "GCA_003026355.1",
                "taxid": 318456,
                "species_taxid": 318456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1547,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Photobacterium kishitanii",
                "strain": "strain=pjapo.1.1",
                "accession": "GCA_003025975.1",
                "taxid": 318456,
                "species_taxid": 318456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9968,
                "matched_fragments": 1534,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Photobacterium kishitanii",
                "strain": "strain=ATCC BAA-1194",
                "accession": "GCA_000950095.1",
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                "species_taxid": 318456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9853,
                "matched_fragments": 1506,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Photobacterium phosphoreum",
                "strain": "strain=JCM 21184",
                "accession": "GCA_002954725.1",
                "taxid": 659,
                "species_taxid": 659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7698,
                "matched_fragments": 1237,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium phosphoreum",
                "strain": "strain=ATCC 11040",
                "accession": "GCA_003026275.1",
                "taxid": 659,
                "species_taxid": 659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7498,
                "matched_fragments": 1235,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium phosphoreum",
                "strain": "strain=ATCC 11040",
                "accession": "GCA_000949955.1",
                "taxid": 659,
                "species_taxid": 659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7155,
                "matched_fragments": 1213,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium aquimaris",
                "strain": "strain=DSM 23343",
                "accession": "GCA_003025415.1",
                "taxid": 512643,
                "species_taxid": 512643,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 86.5487,
                "matched_fragments": 1170,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium malacitanum",
                "strain": "strain=CECT 9190",
                "accession": "GCA_900185615.1",
                "taxid": 2204294,
                "species_taxid": 2204294,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.197,
                "matched_fragments": 1177,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium toruni",
                "strain": "strain=CECT 9189",
                "accession": "GCA_024529955.1",
                "taxid": 1935446,
                "species_taxid": 1935446,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4466,
                "matched_fragments": 1104,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium carnosum",
                "strain": "strain=TMW 2.2021",
                "accession": "GCA_002849605.1",
                "taxid": 2023717,
                "species_taxid": 2023717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4234,
                "matched_fragments": 1057,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium iliopiscarium",
                "strain": "strain=ATCC 51760",
                "accession": "GCA_000950265.1",
                "taxid": 56192,
                "species_taxid": 56192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.381,
                "matched_fragments": 1097,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium piscicola",
                "strain": "strain=type strain: NCCB 100098",
                "accession": "GCA_900166965.1",
                "taxid": 1378299,
                "species_taxid": 1378299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2302,
                "matched_fragments": 1159,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium sanguinicancri",
                "strain": "strain=CECT 7579",
                "accession": "GCA_024346675.1",
                "taxid": 875932,
                "species_taxid": 875932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3296,
                "matched_fragments": 323,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio marisflavi",
                "strain": "strain=CECT 7928",
                "accession": "GCA_921294215.1",
                "taxid": 1216040,
                "species_taxid": 1216040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.149,
                "matched_fragments": 115,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio algicola",
                "strain": "strain=SM1977",
                "accession": "GCA_009601765.2",
                "taxid": 2662262,
                "species_taxid": 2662262,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8723,
                "matched_fragments": 150,
                "total_fragments": 1550,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003026355.1",
                "gtdb_species": "s__Photobacterium kishitanii",
                "ani": 100.0,
                "matched_fragments": 1547,
                "total_fragments": 1550,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.67",
                "min_intra_species_ani": "97.61",
                "mean_intra_species_af": "0.95",
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                "num_clustered_genomes": 24,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002954725.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium",
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                "mean_intra_species_ani": "98.41",
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                "num_clustered_genomes": 23,
                "status": "-"
            },
            {
                "accession": "GCF_002954455.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_900185615.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_002849605.1",
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                "mean_intra_species_ani": "98.77",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_003026395.1",
                "gtdb_species": "s__Photobacterium iliopiscarium",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium",
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                "mean_intra_species_ani": "99.31",
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                "num_clustered_genomes": 7,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "98.92",
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                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.006,
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    "_genome_taxon": [
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        "kishitanii"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}