{ "type": "genome", "identifier": "GCF_003028575.1", "organism": "Halomonas urumqiensis", "title": "Halomonas urumqiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003028575.1", "bioproject": "PRJNA224116", "biosample": "SAMN08634331", "wgs_master": "PYUD00000000.1", "refseq_category": "reference genome", "taxid": "1684789", "species_taxid": "1684789", "organism_name": "Halomonas urumqiensis", "infraspecific_name": "strain=BZ-SZ-XJ27", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/01", "asm_name": "ASM302857v1", "asm_submitter": "Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_003028575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/028/575/GCF_003028575.1_ASM302857v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3978292", "genome_size_ungapped": "3978172", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003028575.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3604", "protein_coding_gene_count": "3515", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-01", "dateModified": "2018-04-01", "datePublished": "2018-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas urumqiensis" ], "sample_taxid": [ "1684789" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang Uyghur Autonomous Region" ], "sample_host_location_id": [], "data_size": "1.109 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3978292", "Number of Sequences": "20", "Longest Sequences (bp)": "1666330", "N50 (bp)": "561230", "Gap Ratio (%)": "0.003016", "GCcontent (%)": "62.6", "Number of CDSs": "3540", "Average Protein Length": "336.0", "Coding Ratio (%)": "89.7", "Number of rRNAs": "4", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas urumqiensis", "strain": "strain=BZ-SZ-XJ27", "accession": "GCA_003028575.1", "taxid": 1684789, "species_taxid": 1684789, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1317, "total_fragments": 1317, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halomonas urumqiensis", "strain": "strain=CGMCC 1.12917", "accession": "GCA_014653135.1", "taxid": 1684789, "species_taxid": 1684789, "relation_to_type": "type", "validated": true, "ani": 99.9984, "matched_fragments": 1312, "total_fragments": 1317, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halomonas urumqiensis", "strain": "strain=BZ-SZ-XJ27", "accession": "GCA_002879635.1", "taxid": 1684789, "species_taxid": 1684789, "relation_to_type": "type", "validated": true, "ani": 99.968, "matched_fragments": 1302, "total_fragments": 1317, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 82.5671, "matched_fragments": 804, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=DSM 26881", "accession": "GCA_002879645.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 82.1871, "matched_fragments": 802, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 82.0837, "matched_fragments": 826, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 81.9028, "matched_fragments": 706, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 81.4627, "matched_fragments": 705, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 81.3247, "matched_fragments": 607, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 81.0187, "matched_fragments": 720, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, "species_taxid": 257772, "relation_to_type": "type", "validated": true, "ani": 80.8955, "matched_fragments": 684, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 80.8425, "matched_fragments": 673, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 80.7878, "matched_fragments": 712, "total_fragments": 1317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas 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