{
    "type": "genome",
    "identifier": "GCF_003046325.1",
    "organism": "Cereibacter johrii",
    "title": "Cereibacter johrii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003046325.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08779227",
        "wgs_master": "PZZW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "445629",
        "species_taxid": "445629",
        "organism_name": "Cereibacter johrii",
        "infraspecific_name": "strain=JA192",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/04/09",
        "asm_name": "ASM304632v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_003046325.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/046/325/GCF_003046325.1_ASM304632v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4591358",
        "genome_size_ungapped": "4591065",
        "gc_percent": "69.500000",
        "replicon_count": "0",
        "scaffold_count": "20",
        "contig_count": "20",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003046325.1-RS_2024_04_27",
        "annotation_date": "2024-04-27",
        "total_gene_count": "4361",
        "protein_coding_gene_count": "4268",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-04-09",
    "dateModified": "2018-04-09",
    "datePublished": "2018-04-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cereibacter johrii"
        ],
        "sample_taxid": [
            "445629"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.236 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4591358",
        "Number of Sequences": "20",
        "Longest Sequences (bp)": "1015086",
        "N50 (bp)": "764488",
        "Gap Ratio (%)": "0.006382",
        "GCcontent (%)": "69.3",
        "Number of CDSs": "4353",
        "Average Protein Length": "312.3",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Cereibacter johrii",
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                "accession": "GCA_003046325.1",
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                "species_taxid": 445629,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1518,
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                "status": "inconclusive"
            },
            {
                "organism_name": "Cereibacter johrii",
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                "status": "inconclusive"
            },
            {
                "organism_name": "[Luteovulum] sphaeroides subsp. megalophilum",
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            },
            {
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                "species_taxid": 1063,
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                "total_fragments": 1519,
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                "status": "inconclusive"
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            {
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                "species_taxid": 1063,
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                "validated": true,
                "ani": 95.1538,
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                "total_fragments": 1519,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Cereibacter sphaeroides",
                "strain": "strain=NBRC 12203",
                "accession": "GCA_007991035.1",
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                "species_taxid": 1063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.1475,
                "matched_fragments": 1346,
                "total_fragments": 1519,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Cereibacter azotoformans",
                "strain": "strain=KA25",
                "accession": "GCA_003050905.1",
                "taxid": 43057,
                "species_taxid": 43057,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2732,
                "matched_fragments": 1040,
                "total_fragments": 1519,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cereibacter sediminicola",
                "strain": "strain=JA983",
                "accession": "GCA_007668225.1",
                "taxid": 2584941,
                "species_taxid": 2584941,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1527,
                "matched_fragments": 1016,
                "total_fragments": 1519,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cereibacter ovatus",
                "strain": "strain=JA234",
                "accession": "GCA_900207575.1",
                "taxid": 439529,
                "species_taxid": 439529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0338,
                "matched_fragments": 819,
                "total_fragments": 1519,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodobacter calidifons",
                "strain": "strain=M37P",
                "accession": "GCA_011174775.1",
                "taxid": 2715277,
                "species_taxid": 2715277,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2204,
                "matched_fragments": 546,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter fulva",
                "strain": "strain=con5",
                "accession": "GCA_018798885.1",
                "taxid": 2840474,
                "species_taxid": 2840474,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5382,
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                "total_fragments": 1519,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_001720585.1",
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                "matched_fragments": 1344,
                "total_fragments": 1519,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cereibacter_A",
                "ani_circumscription_radius": 95.1736,
                "mean_intra_species_ani": "98.42",
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            {
                "accession": "GCF_000012905.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cereibacter_A",
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            {
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            {
                "accession": "GCF_002407205.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_003034985.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cereibacter",
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        ]
    },
    "_bac2feature": {
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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    },
    "_genome_taxon": [
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        "johrii"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}