{ "type": "genome", "identifier": "GCF_003046545.1", "organism": "Rhodovulum imhoffii", "title": "Rhodovulum imhoffii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003046545.1", "bioproject": "PRJNA224116", "biosample": "SAMN08779093", "wgs_master": "QAAA00000000.1", "refseq_category": "reference genome", "taxid": "365340", "species_taxid": "365340", "organism_name": "Rhodovulum imhoffii", "infraspecific_name": "strain=DSM 18064", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/09", "asm_name": "ASM304654v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003046545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/046/545/GCF_003046545.1_ASM304654v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2909339", "genome_size_ungapped": "2908778", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003046545.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "2969", "protein_coding_gene_count": "2844", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-09", "dateModified": "2018-04-09", "datePublished": "2018-04-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodovulum imhoffii" ], "sample_taxid": [ "365340" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.815 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2909339", "Number of Sequences": "59", "Longest Sequences (bp)": "355268", "N50 (bp)": "140937", "Gap Ratio (%)": "0.019283", "GCcontent (%)": "63.1", "Number of CDSs": "2875", "Average Protein Length": "306.3", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodovulum imhoffii", "strain": "strain=DSM 18064", "accession": "GCA_003046545.1", "taxid": 365340, "species_taxid": 365340, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 937, "total_fragments": 937, "ani_threshold": 95, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum dunhuangense", "strain": "strain=YYQ-30", "accession": "GCA_013093415.1", "taxid": 1505036, "species_taxid": 1505036, "relation_to_type": "type", "validated": true, "ani": 77.1129, "matched_fragments": 207, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodonghicola xiamenensis", "strain": "strain=CGMCC 1.7081", "accession": "GCA_014653505.1", "taxid": 337702, "species_taxid": 337702, "relation_to_type": "type", "validated": true, "ani": 77.0155, "matched_fragments": 210, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 77.0051, "matched_fragments": 218, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" 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