# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_1	LOCUS_00010	sequence1:39..275(+)	frameshift,internal_stop_codon	274..276(+)	24	WP_003549102.1	phosphate signaling complex protein PhoU	100.0	34.7	76.9
MGA_2	LOCUS_00020	sequence1:1009..1347(+)	frameshift,internal_stop_codon	746..748(+),1297..1299(+)	898,1043,1236	WP_003549103.1	AEC family transporter	70.5	20.4	60.0
MGA_3	LOCUS_00030	sequence1:1395..1826(+)	frameshift,internal_stop_codon	1825..1827(+),1297..1299(+)	1236	WP_003549103.1	AEC family transporter	99.3	36.1	70.4
MGA_4	LOCUS_00040	sequence1:2903..3034(+)	internal_stop_codon	3044..3046(+),2759..2761(+),2864..2866(+),3032..3034(+)		WP_003549105.1	50S ribosomal protein L10	100.0	25.3	81.4
MGA_5	LOCUS_00050	sequence1:3122..3418(+)	frameshift,internal_stop_codon	3404..3406(+),3452..3454(+),3440..3442(+)	3370	WP_011254128.1	50S ribosomal protein L7/L12	88.8	72.5	73.6
MGA_6	LOCUS_00060	sequence1:4134..4331(+)	frameshift,internal_stop_codon	4384..4386(+),3979..3981(+),4366..4368(+),4000..4002(+)	4074,4323,4374	WP_003549107.1	ion channel	96.9	22.3	73.0
MGA_7	LOCUS_00070	sequence1:4486..4779(+)	frameshift,internal_stop_codon	4468..4470(+),4777..4779(+),4849..4851(+)	4866,4923,4791	WP_011254130.1	methyltransferase	99.0	46.6	74.0
MGA_8	LOCUS_00080	sequence1:6391..6606(+)	frameshift,internal_stop_codon	6787..6789(+),6379..6381(+),6604..6606(+),6715..6717(+)	6248	WP_003549111.1	DNA polymerase III subunit gamma/tau	100.0	11.9	73.2
MGA_9	LOCUS_00090	sequence1:6790..6963(+)	internal_stop_codon	6787..6789(+),6604..6606(+),6715..6717(+),6961..6963(+)		WP_003549111.1	DNA polymerase III subunit gamma/tau	100.0	9.6	75.4
MGA_10	LOCUS_00100	sequence1:6973..7296(+)	frameshift,internal_stop_codon	7379..7381(+),6715..6717(+),7538..7540(+),7409..7411(+),6787..6789(+),6961..6963(+)	7290	WP_003549111.1	DNA polymerase III subunit gamma/tau	99.1	17.8	72.6
MGA_11	LOCUS_00110	sequence1:7685..7807(+)	frameshift,internal_stop_codon	7538..7540(+),7409..7411(+),7805..7807(+),7622..7624(+)	7852	WP_003549111.1	DNA polymerase III subunit gamma/tau	100.0	6.7	80.0
MGA_12	LOCUS_00120	sequence1:8087..8209(+)	frameshift,internal_stop_codon	8469..8471(+),8207..8209(+)	8224,8299	WP_011254133.1	RNA-guided endonuclease TnpB family protein	100.0	10.4	72.5
MGA_13	LOCUS_00130	sequence1:8654..9010(+)	frameshift,internal_stop_codon	9224..9226(+),8468..8470(+),8582..8584(+),8537..8539(+)	9154,8974	WP_011254133.1	RNA-guided endonuclease TnpB family protein	91.5	28.1	79.6
MGA_14	LOCUS_00140	sequence1:9040..9216(+)	frameshift,internal_stop_codon	9224..9226(+)	9154,8974	WP_011254482.1	RNA-guided endonuclease TnpB family protein	62.1	9.4	94.4
MGA_15	LOCUS_00150	sequence1:9434..9697(+)	frameshift		9697,9622	WP_003549112.1	YbaB/EbfC family nucleoid-associated protein	72.4	56.8	77.8
MGA_16	LOCUS_00160	sequence1:9936..10367(+)	frameshift		9951,9815	WP_003549113.1	recombination mediator RecR	96.5	69.3	99.3
MGA_19	LOCUS_00190	sequence1:11510..11674(+)	frameshift		11401,11386,11461	WP_003549116.1	cyclic-di-AMP receptor	100.0	50.9	98.1
MGA_20	LOCUS_00200	sequence1:11757..12200(+)	frameshift		11737,12274,11716,12157	WP_003549117.1	DNA polymerase III subunit delta	94.6	48.8	96.4
MGA_21	LOCUS_00210	sequence1:12283..12528(+)	frameshift		12272,12155	WP_003549117.1	DNA polymerase III subunit delta	100.0	28.4	100.0
MGA_23	LOCUS_00230	sequence1:12890..13414(+)	frameshift		13348	WP_003549119.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	87.4	53.5	100.0
MGA_24	LOCUS_00240	sequence1:13432..13743(+)	frameshift		13345	WP_003549119.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	100.0	36.3	100.0
MGA_25	LOCUS_00250	sequence1:13746..13994(+)	frameshift		13934	WP_011254136.1	thioesterase	79.3	26.5	100.0
MGA_26	LOCUS_00260	sequence1:13963..14484(+)	frameshift		13934	WP_011254136.1	thioesterase	100.0	70.6	99.4
MGA_27	LOCUS_00270	sequence1:14532..14786(+)	frameshift		14768	WP_015613301.1	folate family ECF transporter S component	96.4	47.1	97.5
MGA_28	LOCUS_00280	sequence1:14792..15049(+)	frameshift		14768	WP_015613301.1	folate family ECF transporter S component	100.0	49.4	97.6
MGA_47	LOCUS_00470	sequence1:36079..36333(+)	frameshift		36321	WP_011254144.1	DNA mismatch repair protein MutS	88.1	8.6	100.0
MGA_72	LOCUS_00720	sequence1:61063..61518(-)	frameshift		61553	WP_003549215.1	glycerophosphodiester phosphodiesterase	100.0	33.2	100.0
MGA_73	LOCUS_00730	sequence1:61524..62429(-)	frameshift		61550	WP_003549215.1	glycerophosphodiester phosphodiesterase	97.3	64.4	100.0
MGA_75	LOCUS_00750	sequence1:62864..63973(+)	frameshift		63934	WP_011254152.1	bifunctional UDP-sugar hydrolase/5'-nucleotidase	96.7	77.6	98.9
MGA_76	LOCUS_00760	sequence1:63970..64245(+)	frameshift		63931	WP_011254152.1	bifunctional UDP-sugar hydrolase/5'-nucleotidase	100.0	19.8	100.0
MGA_81	LOCUS_00810	sequence1:66897..67721(-)	internal_stop_codon	67863..67865(-)		WP_014565583.1	NAD(P)/FAD-dependent oxidoreductase	100.0	82.8	77.7
MGA_87	LOCUS_00840	sequence1:78083..78367(+)	internal_stop_codon	78068..78070(+)		WP_025015599.1	DEAD/DEAH box helicase	100.0	9.7	77.7
MGA_118	LOCUS_01120	sequence1:122966..124432(+)	frameshift		124426	WP_011254166.1	AAA family ATPase	100.0	83.8	98.8
MGA_119	LOCUS_01130	sequence1:124416..124715(+)	frameshift		124429	WP_011254166.1	AAA family ATPase	96.0	16.3	100.0
MGA_120	LOCUS_01140	sequence1:124720..125388(+)	frameshift		125508,125301	WP_003546167.1	DNA adenine methylase	87.4	67.1	93.3
MGA_121	LOCUS_01150	sequence1:125334..125552(+)	frameshift		125508,125301	WP_003546167.1	DNA adenine methylase	86.1	21.5	95.2
MGA_143	LOCUS_01370	sequence1:141361..141636(+)	internal_stop_codon	141634..141636(+)		WP_013854628.1	glycerophosphodiester phosphodiesterase family protein	93.4	36.8	90.6
MGA_144	LOCUS_01380	sequence1:141637..142053(+)	internal_stop_codon	141634..141636(+)		WP_013854628.1	glycerophosphodiester phosphodiesterase family protein	99.3	59.3	77.4
MGA_180	LOCUS_01740	sequence1:184272..184460(+)	frameshift		184424	WP_009550763.1	hypothetical protein	83.9	28.1	96.2
MGA_181	LOCUS_01750	sequence1:184469..184819(+)	frameshift		184424	WP_009550763.1	hypothetical protein	100.0	62.7	94.0
MGA_188	LOCUS_01820	sequence1:189438..189785(+)	frameshift		189438	WP_010878919.1	aspartate/glutamate racemase family protein	95.7	46.7	38.7
MGA_191	LOCUS_01850	sequence1:191370..191903(-)	partial			WP_225852598.1	recombinase zinc beta ribbon domain-containing protein	100.0	51.5	100.0
MGA_205	LOCUS_01980	sequence1:204610..205122(-)	frameshift		205133	WP_025015513.1	Cof-type HAD-IIB family hydrolase	100.0	64.6	90.6
MGA_237	LOCUS_02300	sequence1:236577..237269(+)	frameshift		237263	WP_003546396.1	ABC transporter ATP-binding protein	99.6	39.1	96.5
MGA_238	LOCUS_02310	sequence1:237377..238333(+)	frameshift		237257	WP_003546396.1	ABC transporter ATP-binding protein	100.0	54.4	96.9
MGA_276	LOCUS_02690	sequence1:274061..274369(+)	frameshift		274363	WP_003546472.1	hemolysin family protein	99.0	35.2	100.0
MGA_277	LOCUS_02700	sequence1:274317..274925(+)	frameshift		274357	WP_003546472.1	hemolysin family protein	92.1	64.8	96.2
MGA_304	LOCUS_02970	sequence1:302850..303974(+)	partial			WP_003546527.1	helix-turn-helix domain-containing protein	73.8	73.8	88.8
MGA_330	LOCUS_03230	sequence1:337584..338117(+)	frameshift		338093	WP_003546593.1	RNase adapter RapZ	96.6	58.4	99.4
MGA_331	LOCUS_03240	sequence1:338117..338479(+)	frameshift		338081	WP_003546593.1	RNase adapter RapZ	100.0	41.0	100.0
MGA_341	LOCUS_03340	sequence1:349545..349709(-)	frameshift		349837	WP_011254226.1	hypothetical protein	100.0	31.2	100.0
MGA_342	LOCUS_03350	sequence1:349829..350065(-)	frameshift		349837	WP_011254226.1	hypothetical protein	98.7	44.5	100.0
MGA_369	LOCUS_03620	sequence1:375715..375915(+)	frameshift		375885	WP_003546670.1	competence type IV pilus ATPase ComGA	87.9	17.9	100.0
MGA_370	LOCUS_03630	sequence1:375945..376688(+)	frameshift		375885	WP_003546670.1	competence type IV pilus ATPase ComGA	100.0	76.2	98.8
MGA_379	LOCUS_03720	sequence1:383226..384131(+)	frameshift,internal_stop_codon	383199..383201(+)	384110	WP_201247498.1	pyridoxal phosphate-dependent aminotransferase	99.7	77.5	81.3
MGA_380	LOCUS_03730	sequence1:384104..384307(+)	frameshift		384110	WP_158181789.1	pyridoxal phosphate-dependent aminotransferase	94.0	16.3	76.2
MGA_383	LOCUS_03760	sequence1:385768..386313(+)	internal_stop_codon	386311..386313(+)		WP_011254236.1	response regulator transcription factor	100.0	75.4	100.0
MGA_385	LOCUS_03780	sequence1:388069..388443(+)	frameshift		388368	WP_158181852.1	LLM class flavin-dependent oxidoreductase	83.1	28.6	84.5
MGA_386	LOCUS_03790	sequence1:388389..389132(+)	frameshift		388368	WP_158181852.1	LLM class flavin-dependent oxidoreductase	100.0	68.6	79.4
MGA_496	LOCUS_04890	sequence1:496491..496706(-)	frameshift		496821	WP_003546894.1	DUF2974 domain-containing protein	100.0	13.2	87.3
MGA_497	LOCUS_04900	sequence1:496792..498105(-)	frameshift		496818	WP_003546894.1	DUF2974 domain-containing protein	98.2	79.9	98.6
MGA_502	LOCUS_04950	sequence1:502053..502208(+)	partial			WP_095342080.1	NAD(P)-dependent alcohol dehydrogenase	100.0	13.7	90.2
MGA_507	LOCUS_05000	sequence1:504448..504624(+)	internal_stop_codon	504622..504624(+)		WP_011475996.1	DNA alkylation repair protein	91.4	24.3	56.6
MGA_508	LOCUS_05010	sequence1:504664..505140(+)	internal_stop_codon	504622..504624(+)		WP_011475996.1	DNA alkylation repair protein	91.8	65.6	57.2
MGA_510	LOCUS_05030	sequence1:505472..505645(-)	partial			WP_003546918.1	CsbD family protein	56.1	56.1	90.6
MGA_517	LOCUS_05100	sequence1:510159..510929(+)	partial			WP_014565762.1	PTS cellobiose transporter subunit IIC	100.0	56.9	90.6
MGA_540	LOCUS_05330	sequence1:530444..530944(+)	frameshift		530884	WP_003546985.1	HAD-IC family P-type ATPase	88.6	18.2	95.9
MGA_541	LOCUS_05340	sequence1:530944..532863(+)	frameshift		530887	WP_003546985.1	HAD-IC family P-type ATPase	100.0	79.3	100.0
MGA_543	LOCUS_05360	sequence1:534271..535164(+)	frameshift		534148	WP_003546989.1	methionine ABC transporter ATP-binding protein	100.0	84.1	93.9
MGA_547	LOCUS_05400	sequence1:539013..540230(+)	frameshift		540224	WP_003546999.1	mucus-binding protein	99.8	79.5	100.0
MGA_548	LOCUS_05410	sequence1:540233..540538(+)	frameshift		540221	WP_003546999.1	mucus-binding protein	100.0	19.9	100.0
MGA_582	LOCUS_05750	sequence1:576267..577562(+)	frameshift		577541	WP_025015105.1	acyltransferase family protein	98.8	66.7	82.4
MGA_583	LOCUS_05760	sequence1:577691..578185(+)	frameshift		577547	WP_025015105.1	acyltransferase family protein	100.0	25.7	89.0
MGA_599	LOCUS_05920	sequence1:593055..593177(+)	frameshift		593171	WP_003547084.1	ECF transporter S component	100.0	17.5	100.0
MGA_600	LOCUS_05930	sequence1:593213..593743(+)	frameshift		593171	WP_003547084.1	ECF transporter S component	100.0	76.9	96.6
MGA_610	LOCUS_06030	sequence1:602508..602981(+)	frameshift		602960	WP_011254305.1	DegV family protein	96.2	53.4	100.0
MGA_611	LOCUS_06040	sequence1:602984..603358(+)	frameshift		602957	WP_011254305.1	DegV family protein	100.0	43.8	100.0
MGA_649	LOCUS_06420	sequence1:647241..647687(-)	internal_stop_codon	647241..647243(-)		WP_201247873.1	glycosyltransferase	100.0	40.0	79.7
MGA_668	LOCUS_06610	sequence1:677664..677867(-)	internal_stop_codon	677937..677939(-)		WP_182588486.1	LysR family transcriptional regulator	98.5	22.6	42.4
MGA_693	LOCUS_06860	sequence1:697719..698363(+)	frameshift		697648	WP_135960404.1	MFS transporter	99.5	53.4	81.2
MGA_697	LOCUS_06900	sequence1:701017..701499(+)	frameshift		701475	WP_003547367.1	nucleoside phosphorylase	98.8	62.5	97.5
MGA_698	LOCUS_06910	sequence1:701475..701777(+)	frameshift		701469	WP_003547367.1	nucleoside phosphorylase	100.0	39.5	99.0
MGA_701	LOCUS_06940	sequence1:703367..703756(+)	internal_stop_codon	703754..703756(+)		WP_117118241.1	AEC family transporter	98.4	39.4	72.4
MGA_718	LOCUS_07110	sequence1:719915..720502(+)	frameshift,internal_stop_codon	720569..720571(+)	720487	WP_056996568.1	cysteine synthase family protein	97.9	62.4	64.9
MGA_719	LOCUS_07120	sequence1:721028..721285(+)	internal_stop_codon	721283..721285(+)		WP_102168594.1	PLP-dependent aspartate aminotransferase family protein	100.0	22.4	80.0
MGA_720	LOCUS_07130	sequence1:721367..722173(+)	internal_stop_codon	721283..721285(+)		WP_182586238.1	PLP-dependent aspartate aminotransferase family protein	99.6	70.3	82.4
MGA_721	LOCUS_07140	sequence1:722462..722599(+)	frameshift,internal_stop_codon	722598..722600(+),722262..722264(+)	722339	WP_057799316.1	S-ribosylhomocysteine lyase	97.8	28.0	93.2
MGA_729	LOCUS_07220	sequence1:734480..734791(-)	frameshift		734509	WP_040531169.1	GNAT family N-acetyltransferase	96.1	57.6	70.0
MGA_730	LOCUS_07230	sequence1:734983..735606(+)	internal_stop_codon	735604..735606(+)		WP_182588488.1	aldo/keto reductase	100.0	61.9	77.3
MGA_731	LOCUS_07240	sequence1:735622..735981(+)	internal_stop_codon	735604..735606(+)		WP_182588488.1	aldo/keto reductase	100.0	36.3	68.9
MGA_739	LOCUS_07320	sequence1:741031..741795(+)	internal_stop_codon	740836..740838(+)		WP_014565877.1	flavodoxin	100.0	67.1	79.5
MGA_744	LOCUS_07370	sequence1:743910..744359(+)	partial			WP_004046647.1	zinc-dependent alcohol dehydrogenase family protein	100.0	43.1	81.2
MGA_747	LOCUS_07400	sequence1:746269..746619(+)	partial			WP_082599082.1	alpha/beta hydrolase	41.4	18.0	66.7
MGA_748	LOCUS_07410	sequence1:746597..746872(-)	frameshift		746876	WP_103661284.1	pyrroline-5-carboxylate reductase	93.4	33.2	77.6
MGA_749	LOCUS_07420	sequence1:746859..747146(-)	frameshift		746873	WP_025006378.1	pyrroline-5-carboxylate reductase	60.0	22.2	73.7
MGA_767	LOCUS_07600	sequence1:767324..767662(-)	frameshift,internal_stop_codon	767864..767866(-)	767692,767767	WP_025022919.1	NAD(P)H-dependent oxidoreductase	87.5	50.9	56.9
MGA_773	LOCUS_07660	sequence1:772694..773029(-)	frameshift		773100	WP_011254353.1	DegV family protein	100.0	37.9	100.0
MGA_774	LOCUS_07670	sequence1:773095..773574(-)	frameshift		773100	WP_011254353.1	DegV family protein	99.4	53.9	98.7
MGA_792	LOCUS_07850	sequence1:794186..795403(-)	frameshift		795420	WP_011254365.1	helicase C-terminal domain-containing protein	100.0	43.7	96.0
MGA_793	LOCUS_07860	sequence1:795394..796968(-)	frameshift		795417	WP_011254365.1	helicase C-terminal domain-containing protein	97.9	55.3	100.0
MGA_801	LOCUS_07940	sequence1:809236..809418(+)	frameshift		809415	WP_065989431.1	ribose-5-phosphate isomerase A	76.7	20.3	69.6
MGA_803	LOCUS_07960	sequence1:809928..810503(+)	frameshift		810500	WP_011674856.1	Gfo/Idh/MocA family oxidoreductase	99.5	58.3	73.7
MGA_804	LOCUS_07970	sequence1:810560..810907(+)	frameshift		810500	WP_013438056.1	hypothetical protein	100.0	75.7	91.3
MGA_811	LOCUS_08040	sequence1:816294..816716(-)	partial			WP_003547600.1	hypothetical protein	100.0	53.6	83.6
MGA_854	LOCUS_08470	sequence1:860423..860848(-)	frameshift		860862	WP_011254391.1	LysR family transcriptional regulator	100.0	49.8	100.0
MGA_855	LOCUS_08480	sequence1:860839..861273(-)	frameshift		860859	WP_011254391.1	LysR family transcriptional regulator	97.9	49.8	97.9
MGA_856	LOCUS_08490	sequence1:861401..861877(+)	frameshift		861871	WP_011254392.1	plasma-membrane proton-efflux P-type ATPase	99.4	20.7	96.2
MGA_857	LOCUS_08500	sequence1:861976..863673(+)	frameshift		861871	WP_011254392.1	plasma-membrane proton-efflux P-type ATPase	100.0	74.6	97.7
MGA_959	LOCUS_09520	sequence1:971582..972163(-)	internal_stop_codon	972200..972202(-)		WP_135960345.1	amidohydrolase family protein	100.0	48.9	84.5
MGA_960	LOCUS_09530	sequence1:972200..972781(-)	internal_stop_codon	972200..972202(-)		WP_188891678.1	amidohydrolase family protein	100.0	48.6	80.0
MGA_961	LOCUS_09540	sequence1:973106..973477(-)	frameshift		973114,972859,972988	WP_154881464.1	peptide ABC transporter substrate-binding protein	99.2	22.6	82.0
MGA_962	LOCUS_09550	sequence1:973802..974356(-)	internal_stop_codon	973802..973804(-)		WP_154881464.1	peptide ABC transporter substrate-binding protein	99.5	33.5	76.0
MGA_992	LOCUS_09850	sequence1:1013591..1014385(-)	frameshift		1014549	WP_011254442.1	dihydroorotase	100.0	62.1	100.0
MGA_993	LOCUS_09860	sequence1:1014457..1014867(-)	frameshift		1014549	WP_011254442.1	dihydroorotase	72.1	23.1	100.0
MGA_996	LOCUS_09890	sequence1:1016683..1016889(-)	frameshift		1016899	WP_011254443.1	dihydroorotate dehydrogenase	100.0	22.1	98.5
MGA_997	LOCUS_09900	sequence1:1016861..1017607(-)	frameshift		1016899	WP_011254443.1	dihydroorotate dehydrogenase	96.8	78.2	98.8
MGA_1027	LOCUS_10200	sequence1:1058128..1058418(-)	frameshift		1058453	WP_011254457.1	glycosyltransferase	100.0	22.6	100.0
MGA_1028	LOCUS_10210	sequence1:1058415..1059404(-)	frameshift		1058450	WP_011254457.1	glycosyltransferase	95.7	74.1	99.0
MGA_1037	LOCUS_10300	sequence1:1065634..1066329(-)	frameshift		1066378	WP_025080575.1	alpha/beta hydrolase	100.0	78.5	73.9
MGA_1060	LOCUS_10530	sequence1:1087140..1087328(-)	frameshift		1087348	WP_019639497.1	alpha-galactosidase	59.7	5.2	68.4
MGA_1101	LOCUS_10940	sequence1:1133141..1134169(+)	partial			WP_003548232.1	FGGY family carbohydrate kinase	100.0	70.8	100.0
MGA_1168	LOCUS_11600	sequence1:1206249..1206629(-)	frameshift		1206697	WP_011254497.1	5-(carboxyamino)imidazole ribonucleotide synthase	100.0	35.1	99.2
MGA_1169	LOCUS_11610	sequence1:1206656..1207396(-)	frameshift		1206691	WP_011254497.1	5-(carboxyamino)imidazole ribonucleotide synthase	89.4	61.3	95.5
MGA_1215	LOCUS_12070	sequence1:1254558..1256045(-)	frameshift		1256074,1256071	WP_003548485.1	mucus-binding protein	100.0	77.0	97.2
MGA_1216	LOCUS_12080	sequence1:1256018..1256488(-)	frameshift		1256065,1256074	WP_003548485.1	mucus-binding protein	90.4	21.9	100.0
MGA_1225	LOCUS_12170	sequence1:1275043..1275534(-)	frameshift		1275601	WP_013853658.1	FAD-dependent oxidoreductase	100.0	40.4	92.0
MGA_1227	LOCUS_12190	sequence1:1276252..1276629(-)	partial			WP_003706422.1	cytochrome ubiquinol oxidase subunit I	96.8	23.9	59.0
MGA_1230	LOCUS_12220	sequence1:1280246..1280398(-)	frameshift,internal_stop_codon	1280095..1280097(-),1280014..1280016(-),1280089..1280091(-)	1280184,1280385,1280097,1280271	WP_007126647.1	zinc ABC transporter substrate-binding protein	82.0	13.9	68.3
MGA_1263	LOCUS_12530	sequence1:1331625..1332095(-)	frameshift		1332153	WP_011254534.1	ABC transporter ATP-binding protein	100.0	29.2	98.7
MGA_1264	LOCUS_12540	sequence1:1332109..1333230(-)	frameshift		1332153	WP_011254534.1	ABC transporter ATP-binding protein	99.7	69.7	96.8
MGA_1288	LOCUS_12780	sequence1:1355031..1355189(+)	frameshift		1355411,1355174	WP_003549985.1	hypothetical protein	98.1	22.4	98.0
MGA_1289	LOCUS_12790	sequence1:1355237..1355413(+)	frameshift		1355408,1355177	WP_003549985.1	hypothetical protein	100.0	25.4	98.3
MGA_1290	LOCUS_12800	sequence1:1355464..1355715(+)	frameshift		1355407	WP_003549985.1	hypothetical protein	100.0	36.4	91.6
MGA_1313	LOCUS_13030	sequence1:1379245..1379820(-)	frameshift		1379837	WP_003549938.1	MupG family TIM beta-alpha barrel fold protein	100.0	54.1	99.0
MGA_1314	LOCUS_13040	sequence1:1379799..1380305(-)	frameshift		1379837	WP_003549938.1	MupG family TIM beta-alpha barrel fold protein	100.0	47.6	91.1
MGA_1325	LOCUS_13150	sequence1:1397432..1398346(-)	frameshift		1398360	WP_011254549.1	DUF2326 domain-containing protein	100.0	53.1	97.7
MGA_1326	LOCUS_13160	sequence1:1398343..1399149(-)	frameshift		1398357	WP_011254549.1	DUF2326 domain-containing protein	99.6	46.7	98.9
MGA_1338	LOCUS_13280	sequence1:1408141..1408521(-)	partial			WP_154549573.1	IS3 family transposase	81.7	24.5	73.8
MGA_1339	LOCUS_13290	sequence1:1408463..1409203(-)	partial			WP_117118503.1	IS3 family transposase	99.2	55.5	49.2
MGA_1361	LOCUS_13510	sequence1:1434955..1435782(+)	partial			WP_003549839.1	O-antigen ligase family protein	100.0	54.7	97.8
MGA_1368	LOCUS_13580	sequence1:1439662..1439922(-)	partial			WP_014567504.1	Fe-S cluster assembly protein SufB	100.0	18.4	95.3
MGA_1369	LOCUS_13590	sequence1:1439939..1440169(-)	partial			WP_004894681.1	Fe-S cluster assembly ATPase SufC	96.1	27.7	80.8
MGA_1457	LOCUS_14470	sequence1:1516016..1516585(+)	frameshift		1516504	WP_044005378.1	MFS transporter	84.1	39.4	64.8
MGA_1458	LOCUS_14480	sequence1:1516585..1517259(+)	frameshift		1516504	WP_044005378.1	MFS transporter	95.5	53.0	52.3
MGA_1481	LOCUS_14710	sequence1:1541660..1542094(-)	partial			WP_075917345.1	hypothetical protein	100.0	72.7	99.3
MGA_1482	LOCUS_14720	sequence1:1542202..1542480(-)	frameshift		1542258	WP_003549642.1	helix-turn-helix transcriptional regulator	72.8	24.6	49.3
MGA_1520	LOCUS_15100	sequence1:1582928..1583116(-)	frameshift		1582942	WP_014566242.1	hypothetical protein	90.3	42.4	76.8
MGA_1538	LOCUS_15280	sequence1:1600923..1601618(+)	partial			WP_011254625.1	YdcF family protein	100.0	62.9	92.6
MGA_1554	LOCUS_15440	sequence1:1618148..1618498(-)	frameshift		1618593	WP_003549457.1	MerR family transcriptional regulator	100.0	47.7	100.0
MGA_1555	LOCUS_15450	sequence1:1618585..1618878(-)	frameshift		1618593	WP_003549457.1	MerR family transcriptional regulator	99.0	39.5	100.0
MGA_1558	LOCUS_15480	sequence1:1621752..1622474(+)	frameshift		1622462	WP_011254631.1	peptide ABC transporter substrate-binding protein	94.2	41.8	96.0
MGA_1559	LOCUS_15490	sequence1:1622480..1623376(+)	frameshift		1622459	WP_011254631.1	peptide ABC transporter substrate-binding protein	100.0	55.1	98.3
MGA_1604	LOCUS_15940	sequence1:1670967..1671761(+)	frameshift		1671743	WP_003549316.1	phage integrase SAM-like domain-containing protein	98.1	63.0	99.2
MGA_1605	LOCUS_15950	sequence1:1671758..1672201(+)	frameshift		1671740	WP_003549316.1	phage integrase SAM-like domain-containing protein	100.0	35.8	97.3
MGA_1613	LOCUS_16030	sequence1:1676954..1677895(+)	frameshift		1677886	WP_003549299.1	LPXTG cell wall anchor domain-containing protein	99.4	71.5	99.0
MGA_1614	LOCUS_16040	sequence1:1678012..1678260(+)	frameshift		1677883	WP_003549299.1	LPXTG cell wall anchor domain-containing protein	100.0	18.9	97.6
MGA_1631	LOCUS_16210	sequence1:1693907..1694125(-)	frameshift		1694124	WP_103660536.1	endonuclease	100.0	26.6	83.3
MGA_1632	LOCUS_16220	sequence1:1694050..1694763(-)	frameshift		1694123,1694765	WP_056938137.1	endonuclease	89.5	59.1	78.3
MGA_1633	LOCUS_16230	sequence1:1694745..1694969(-)	frameshift		1694765	WP_056938137.1	endonuclease	91.9	18.5	57.4
MGA_1637	LOCUS_16270	sequence1:1699124..1699369(+)	frameshift		1699348	WP_011254017.1	DEAD/DEAH box helicase	93.8	8.1	100.0
MGA_1644	LOCUS_16320	sequence1:1709702..1710124(-)	frameshift,internal_stop_codon	1709702..1709704(-)	1710101	WP_010964896.1	LysR substrate-binding domain-containing protein	92.1	44.4	32.3
MGA_1645	LOCUS_16330	sequence1:1710334..1710678(+)	frameshift,internal_stop_codon	1710826..1710828(+)	1710639	WP_187364788.1	flavocytochrome c	95.6	17.7	78.0
MGA_1646	LOCUS_16340	sequence1:1710705..1710827(+)	frameshift,internal_stop_codon	1710826..1710828(+)	1710639	WP_193363685.1	flavocytochrome c	100.0	7.0	82.5
MGA_1647	LOCUS_16350	sequence1:1710993..1712183(+)	internal_stop_codon	1710825..1710827(+)		WP_187364788.1	flavocytochrome c	99.5	64.0	88.8
MGA_1656	LOCUS_16440	sequence1:1718520..1718978(+)	partial			WP_014565478.1	SLAP domain-containing protein	77.0	31.0	81.2
MGA_1681	LOCUS_16690	sequence1:1744334..1744927(+)	frameshift		1744909	WP_011254037.1	hypothetical protein	99.5	68.5	98.5
MGA_1682	LOCUS_16700	sequence1:1744953..1745195(+)	frameshift		1744903	WP_011254037.1	hypothetical protein	100.0	28.0	100.0
MGA_1683	LOCUS_16710	sequence1:1745188..1745337(+)	partial			WP_015613278.1	hypothetical protein	69.4	69.4	100.0
MGA_1694	LOCUS_16820	sequence1:1755094..1755471(-)	partial			WP_004039686.1	methylated-DNA--[protein]-cysteine S-methyltransferase	96.8	70.3	71.1
MGA_1708	LOCUS_16960	sequence1:1766667..1767119(+)	partial			WP_048065307.1	helix-turn-helix domain-containing protein	95.3	34.0	29.3
MGA_1744	LOCUS_17320	sequence1:1807169..1807618(-)	partial			WP_003548787.1	hypothetical protein	34.9	34.9	80.8
MGA_1823	LOCUS_18110	sequence1:1889866..1890090(+)	partial			WP_003548946.1	MFS transporter	100.0	63.2	100.0
MGA_1844	LOCUS_18320	sequence1:1906437..1908443(+)	frameshift		1908440	WP_011254101.1	transcription-repair coupling factor	100.0	57.3	100.0
MGA_1845	LOCUS_18330	sequence1:1908458..1909933(+)	frameshift		1908437	WP_011254101.1	transcription-repair coupling factor	100.0	42.1	99.4
MGA_1898	LOCUS_18850	sequence1:1951789..1951947(+)	partial			WP_178084644.1	hypothetical protein	94.2	29.9	87.8
MGA_1905	LOCUS_18920	sequence1:1956260..1956700(+)	partial			WP_021721658.1	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	100.0	64.9	100.0
MGA_1948	LOCUS_19350	sequence1:1991847..1992371(+)	frameshift		1992305	WP_003549119.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	87.4	53.5	100.0
MGA_1949	LOCUS_19360	sequence1:1992389..1992700(+)	frameshift		1992302	WP_003549119.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	100.0	36.3	100.0
MGA_1963	LOCUS_19500	sequence1:2006956..2007201(-)	frameshift		2006769,2006841,2007000,2006985,2006667	WP_003549144.1	LacI family DNA-binding transcriptional regulator	91.4	22.6	91.9
MGA_1964	LOCUS_19510	sequence1:2007925..2008080(-)	frameshift		2007744,2008134,2008200,2007753,2008266,2008212,2007765,2007900,2008221,2007840,2007648,2008035,2007726,2008239,2007855,2007918,2008305,2007861,2008053	WP_003549147.1	sucrose-6-phosphate hydrolase	100.0	10.5	78.4
MGA_1965	LOCUS_19520	sequence1:2008954..2009442(+)	frameshift		2008930,2009398	WP_011254141.1	sucrose-specific PTS transporter subunit IIBC	92.0	23.4	96.7
