{ "type": "genome", "identifier": "GCF_003047285.1", "organism": "Nocardioides allogilvus", "title": "Nocardioides allogilvus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003047285.1", "bioproject": "PRJNA224116", "biosample": "SAMN08798510", "wgs_master": "PZYX00000000.1", "refseq_category": "reference genome", "taxid": "2072017", "species_taxid": "2072017", "organism_name": "Nocardioides allogilvus", "infraspecific_name": "strain=KCTC 49020", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/10", "asm_name": "ASM304728v1", "asm_submitter": "Sun Yat-sen University", "gbrs_paired_asm": "GCA_003047285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/047/285/GCF_003047285.1_ASM304728v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3964129", "genome_size_ungapped": "3964129", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "80", "contig_count": "80", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003047285.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3911", "protein_coding_gene_count": "3822", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-10", "dateModified": "2018-04-10", "datePublished": "2018-04-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides allogilvus" ], "sample_taxid": [ "2072017" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: cave" ], "sample_host_location_id": [], "data_size": "1.064 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3964129", "Number of Sequences": "80", "Longest Sequences (bp)": "674276", "N50 (bp)": "221284", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.9", "Number of CDSs": "3876", "Average Protein Length": "316.0", "Coding Ratio (%)": "92.7", "Number of rRNAs": "2", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides allogilvus", "strain": "strain=KCTC 49020", "accession": "GCA_003047285.1", "taxid": 2072017, "species_taxid": 2072017, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1292, "total_fragments": 1292, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides currus", "strain": "strain=IB-3", "accession": "GCA_003057875.1", "taxid": 2133958, "species_taxid": 2133958, "relation_to_type": "type", "validated": true, "ani": 85.6458, "matched_fragments": 910, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides piscis", "strain": "strain=HDW12A", "accession": "GCA_011300215.1", "taxid": 2714938, "species_taxid": 2714938, "relation_to_type": "type", "validated": true, "ani": 83.6466, "matched_fragments": 846, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides terrigena", "strain": "strain=KCTC 19217", "accession": "GCA_003047265.1", "taxid": 424797, "species_taxid": 424797, "relation_to_type": "type", "validated": true, "ani": 83.4505, "matched_fragments": 834, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sediminis", "strain": "strain=KCTC 19271", "accession": "GCA_003047295.1", "taxid": 433648, "species_taxid": 433648, "relation_to_type": "type", "validated": true, "ani": 83.0944, "matched_fragments": 827, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides baculatus", "strain": "strain=G10", "accession": "GCA_016735675.1", "taxid": 2801337, "species_taxid": 2801337, "relation_to_type": "type", "validated": true, "ani": 82.3403, "matched_fragments": 776, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 82.0879, "matched_fragments": 773, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides zhouii", "strain": "strain=HLT2-9", "accession": "GCA_004137345.1", "taxid": 1168729, "species_taxid": 1168729, "relation_to_type": "type", "validated": true, "ani": 82.0579, "matched_fragments": 753, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 82.0303, "matched_fragments": 769, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides exalbidus", "strain": "strain=DSM 22017", "accession": "GCA_900105585.1", "taxid": 402596, "species_taxid": 402596, "relation_to_type": "type", "validated": true, "ani": 81.9845, "matched_fragments": 776, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides alpinus", "strain": "strain=CGMCC 1.10697", "accession": "GCA_900112035.1", "taxid": 748909, 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