{ "type": "genome", "identifier": "GCF_003047295.1", "organism": "Nocardioides sediminis", "title": "Nocardioides sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003047295.1", "bioproject": "PRJNA224116", "biosample": "SAMN08820071", "wgs_master": "PZYZ00000000.1", "refseq_category": "reference genome", "taxid": "433648", "species_taxid": "433648", "organism_name": "Nocardioides sediminis", "infraspecific_name": "strain=KCTC 19271", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/10", "asm_name": "ASM304729v1", "asm_submitter": "Sun Yat-sen University", "gbrs_paired_asm": "GCA_003047295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/047/295/GCF_003047295.1_ASM304729v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4284245", "genome_size_ungapped": "4284245", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003047295.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4206", "protein_coding_gene_count": "4129", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-10", "dateModified": "2018-04-10", "datePublished": "2018-04-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides sediminis" ], "sample_taxid": [ "433648" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Bigeum Island" ], "sample_host_location_id": [], "data_size": "1.132 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4284245", "Number of Sequences": "31", "Longest Sequences (bp)": "1004883", "N50 (bp)": "375448", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.3", "Number of CDSs": "4175", "Average Protein Length": "318.6", "Coding Ratio (%)": "93.1", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides sediminis", "strain": "strain=KCTC 19271", "accession": "GCA_003047295.1", "taxid": 433648, "species_taxid": 433648, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1416, "total_fragments": 1416, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides terrigena", "strain": "strain=KCTC 19217", "accession": "GCA_003047265.1", "taxid": 424797, "species_taxid": 424797, "relation_to_type": "type", "validated": true, "ani": 87.1627, "matched_fragments": 1056, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides currus", "strain": "strain=IB-3", "accession": "GCA_003057875.1", "taxid": 2133958, "species_taxid": 2133958, "relation_to_type": "type", "validated": true, "ani": 83.0892, "matched_fragments": 904, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides allogilvus", "strain": "strain=KCTC 49020", "accession": "GCA_003047285.1", "taxid": 2072017, "species_taxid": 2072017, "relation_to_type": "type", "validated": true, "ani": 83.0152, "matched_fragments": 829, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { 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397258, "relation_to_type": "type", "validated": true, "ani": 82.1041, "matched_fragments": 811, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides piscis", "strain": "strain=HDW12A", "accession": "GCA_011300215.1", "taxid": 2714938, "species_taxid": 2714938, "relation_to_type": "type", "validated": true, "ani": 82.0284, "matched_fragments": 760, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 81.4813, "matched_fragments": 737, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013409965.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 81.4194, "matched_fragments": 740, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 81.415, "matched_fragments": 738, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015339545.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 81.1219, "matched_fragments": 753, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides szechwanensis", "strain": "strain=CGMCC 1.11147", "accession": "GCA_900103935.1", "taxid": 1005944, "species_taxid": 1005944, "relation_to_type": "type", "validated": true, "ani": 81.0404, "matched_fragments": 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