{
    "type": "genome",
    "identifier": "GCF_003049575.1",
    "organism": "Lysinibacillus parviboronicapiens",
    "title": "Lysinibacillus parviboronicapiens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Virginia Polytechnic Institute and State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003049575.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08796414",
        "wgs_master": "PYWI00000000.1",
        "refseq_category": "na",
        "taxid": "436516",
        "species_taxid": "436516",
        "organism_name": "Lysinibacillus parviboronicapiens",
        "infraspecific_name": "strain=BAM-582",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/04/11",
        "asm_name": "ASM304957v1",
        "asm_submitter": "Virginia Polytechnic Institute and State University",
        "gbrs_paired_asm": "GCA_003049575.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/049/575/GCF_003049575.1_ASM304957v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4752266",
        "genome_size_ungapped": "4752266",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "117",
        "contig_count": "117",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003049575.1-RS_2024_08_05",
        "annotation_date": "2024-08-05",
        "total_gene_count": "4724",
        "protein_coding_gene_count": "4471",
        "non_coding_gene_count": "109",
        "pubmed_id": "28753208"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-04-11",
    "dateModified": "2018-04-11",
    "datePublished": "2018-04-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lysinibacillus parviboronicapiens"
        ],
        "sample_taxid": [
            "436516"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Turkey"
        ],
        "sample_host_location_id": [],
        "data_size": "1.355 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4752266",
        "Number of Sequences": "117",
        "Longest Sequences (bp)": "524105",
        "N50 (bp)": "151684",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.5",
        "Number of CDSs": "4630",
        "Average Protein Length": "278.3",
        "Coding Ratio (%)": "81.3",
        "Number of rRNAs": "13",
        "Number of tRNAs": "79",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lysinibacillus parviboronicapiens",
                "strain": "strain=BAM-582",
                "accession": "GCA_003049575.1",
                "taxid": 436516,
                "species_taxid": 436516,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1529,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lysinibacillus sphaericus",
                "strain": "strain=KCTC 3346",
                "accession": "GCA_000427235.1",
                "taxid": 1421,
                "species_taxid": 1421,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.6519,
                "matched_fragments": 855,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus mangiferihumi",
                "strain": "strain=M-GX18",
                "accession": "GCA_003049665.1",
                "taxid": 1130819,
                "species_taxid": 1130819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6255,
                "matched_fragments": 868,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus tabacifolii",
                "strain": "strain=KCTC 33042",
                "accession": "GCA_005217585.1",
                "taxid": 1173107,
                "species_taxid": 1173107,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.6179,
                "matched_fragments": 867,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus tabacifolii",
                "strain": "strain=K3514",
                "accession": "GCA_003049565.1",
                "taxid": 1173107,
                "species_taxid": 1173107,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.584,
                "matched_fragments": 872,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus sphaericus",
                "strain": "strain=NRRL B-23268",
                "accession": "GCA_005217555.1",
                "taxid": 1421,
                "species_taxid": 1421,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.5684,
                "matched_fragments": 851,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus mangiferihumi",
                "strain": "strain=CCTCC AB 2010389",
                "accession": "GCA_005217845.1",
                "taxid": 1130819,
                "species_taxid": 1130819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5634,
                "matched_fragments": 865,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus varians",
                "strain": "strain=NBRC 109424",
                "accession": "GCA_005217815.1",
                "taxid": 1145276,
                "species_taxid": 1145276,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.5308,
                "matched_fragments": 865,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus sphaericus",
                "strain": "strain=NBRC 15095",
                "accession": "GCA_006539805.1",
                "taxid": 1421,
                "species_taxid": 1421,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.5256,
                "matched_fragments": 848,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus varians",
                "strain": "strain=GY32",
                "accession": "GCA_000600105.1",
                "taxid": 1145276,
                "species_taxid": 1145276,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.5074,
                "matched_fragments": 861,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus sphaericus",
                "strain": "strain=NCTC10338",
                "accession": "GCA_900445465.1",
                "taxid": 1421,
                "species_taxid": 1421,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.477,
                "matched_fragments": 876,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus agricola",
                "strain": "strain=FJAT-51161",
                "accession": "GCA_016638705.1",
                "taxid": 2590012,
                "species_taxid": 2590012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3324,
                "matched_fragments": 885,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus xylanilyticus",
                "strain": "strain=DSM 23493",
                "accession": "GCA_001183605.1",
                "taxid": 582475,
                "species_taxid": 582475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0958,
                "matched_fragments": 915,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus cavernae",
                "strain": "strain=SYSU K30005",
                "accession": "GCA_009724685.1",
                "taxid": 2666135,
                "species_taxid": 2666135,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4622,
                "matched_fragments": 796,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus macroides",
                "strain": "strain=DSM 54",
                "accession": "GCA_001281525.1",
                "taxid": 33935,
                "species_taxid": 33935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9904,
                "matched_fragments": 684,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus contaminans",
                "strain": "strain=DSM 25560",
                "accession": "GCA_001278945.1",
                "taxid": 1293441,
                "species_taxid": 1293441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5353,
                "matched_fragments": 684,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solibacillus merdavium",
                "strain": "strain=Sa1YVA6",
                "accession": "GCA_014836935.1",
                "taxid": 2762218,
                "species_taxid": 2762218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5765,
                "matched_fragments": 197,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solibacillus faecavium",
                "strain": "strain=A46",
                "accession": "GCA_014836905.1",
                "taxid": 2762221,
                "species_taxid": 2762221,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0786,
                "matched_fragments": 212,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ureibacillus chungkukjangi",
                "strain": "strain=2RL32",
                "accession": "GCA_003049615.1",
                "taxid": 1202712,
                "species_taxid": 1202712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8846,
                "matched_fragments": 216,
                "total_fragments": 1532,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003049575.1",
                "gtdb_species": "s__Lysinibacillus parviboronicapiens",
                "ani": 100.0,
                "matched_fragments": 1529,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "98.61",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000392615.1",
                "gtdb_species": "s__Lysinibacillus sphaericus_B",
                "ani": 89.695,
                "matched_fragments": 1273,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007362955.1",
                "gtdb_species": "s__Lysinibacillus fusiformis_E",
                "ani": 89.1211,
                "matched_fragments": 1274,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003049665.1",
                "gtdb_species": "s__Lysinibacillus mangiferihumi",
                "ani": 82.6191,
                "matched_fragments": 869,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 96.9114,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015999545.1",
                "gtdb_species": "s__Lysinibacillus sp002340205",
                "ani": 82.5555,
                "matched_fragments": 877,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "97.71",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002982115.1",
                "gtdb_species": "s__Lysinibacillus sphaericus",
                "ani": 82.5552,
                "matched_fragments": 877,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 96.9114,
                "mean_intra_species_ani": "99.42",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_001728805.1",
                "gtdb_species": "s__Lysinibacillus sphaericus_D",
                "ani": 82.5339,
                "matched_fragments": 856,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 96.1498,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "99.28",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016638705.1",
                "gtdb_species": "s__Lysinibacillus sp001278875",
                "ani": 82.3305,
                "matched_fragments": 885,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001708185.1",
                "gtdb_species": "s__Lysinibacillus xylanilyticus_A",
                "ani": 82.2345,
                "matched_fragments": 884,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001183605.1",
                "gtdb_species": "s__Lysinibacillus xylanilyticus",
                "ani": 82.0872,
                "matched_fragments": 916,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.05",
                "min_intra_species_ani": "95.97",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001275675.1",
                "gtdb_species": "s__Lysinibacillus sp001275675",
                "ani": 82.0502,
                "matched_fragments": 914,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002237755.1",
                "gtdb_species": "s__Lysinibacillus sp002237755",
                "ani": 82.0474,
                "matched_fragments": 910,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.32",
                "min_intra_species_ani": "95.08",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001281525.1",
                "gtdb_species": "s__Lysinibacillus macroides",
                "ani": 80.9965,
                "matched_fragments": 683,
                "total_fragments": 1532,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.125,
        "cell_length": 0.544,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.0,
        "genome_size": 4717208.0,
        "gc_content": 38.136,
        "coding_genes": 4438.19,
        "rRNA16S_genes": 11.166,
        "tRNA_genes": 100.944,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.5,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Lysinibacillus",
        "parviboronicapiens"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}