{ "type": "genome", "identifier": "GCF_003050615.1", "organism": "Sphingomonas oleivorans", "title": "Sphingomonas oleivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003050615.1", "bioproject": "PRJNA224116", "biosample": "SAMN07601762", "wgs_master": "NWBU00000000.1", "refseq_category": "reference genome", "taxid": "1735121", "species_taxid": "1735121", "organism_name": "Sphingomonas oleivorans", "infraspecific_name": "strain=FW-11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/12", "asm_name": "ASM305061v1", "asm_submitter": "China Agricultural University", "gbrs_paired_asm": "GCA_003050615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/050/615/GCF_003050615.1_ASM305061v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3873878", "genome_size_ungapped": "3873878", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003050615.1-RS_2024_04_15", "annotation_date": "2024-04-15", "total_gene_count": "3696", "protein_coding_gene_count": "3583", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-12", "dateModified": "2018-04-12", "datePublished": "2018-04-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas oleivorans" ], "sample_taxid": [ "1735121" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Panjin oilfield, Liaoning Province" ], "sample_host_location_id": [], "data_size": "1.060 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3873878", "Number of Sequences": "19", "Longest Sequences (bp)": "1065876", "N50 (bp)": "464715", "Gap Ratio (%)": "0.000052", "GCcontent (%)": "65.4", "Number of CDSs": "3656", "Average Protein Length": "316.4", "Coding Ratio (%)": "89.6", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas oleivorans", "strain": "strain=FW-11", "accession": "GCA_003050615.1", "taxid": 1735121, "species_taxid": 1735121, "relation_to_type": "type", "validated": true, "ani": 100.0, 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95, "status": "below_threshold" }, { "organism_name": "Sphingomonas profundi", "strain": "strain=LMO-1", "accession": "GCA_009739515.1", "taxid": 2681549, "species_taxid": 2681549, "relation_to_type": "type", "validated": true, "ani": 79.8945, "matched_fragments": 534, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas formosensis", "strain": "strain=CC-Nfb-2", "accession": "GCA_009755815.1", "taxid": 861534, "species_taxid": 861534, "relation_to_type": "type", "validated": true, "ani": 79.7858, "matched_fragments": 491, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizorhabdus histidinilytica", "strain": "strain=UM2", "accession": "GCA_900167915.1", "taxid": 439228, "species_taxid": 439228, "relation_to_type": "type", "validated": true, "ani": 79.655, "matched_fragments": 506, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"accession": "GCA_009913435.1", "taxid": 2698679, "species_taxid": 2698679, "relation_to_type": "type", "validated": true, "ani": 79.2128, "matched_fragments": 390, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizorhabdus phycosphaerae", "strain": "strain=MK52", "accession": "GCA_011044255.1", "taxid": 2711156, "species_taxid": 2711156, "relation_to_type": "type", "validated": true, "ani": 79.1388, "matched_fragments": 424, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", "validated": true, "ani": 78.8744, "matched_fragments": 367, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas pokkalii", "strain": "strain=L3B27", "accession": "GCA_003096275.1", "taxid": 2175090, 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