{ "type": "genome", "identifier": "GCF_003050755.1", "organism": "Mucilaginibacter yixingensis", "title": "Mucilaginibacter yixingensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003050755.1", "bioproject": "PRJNA224116", "biosample": "SAMN08776941", "wgs_master": "QAOQ00000000.1", "refseq_category": "reference genome", "taxid": "1295612", "species_taxid": "1295612", "organism_name": "Mucilaginibacter yixingensis", "infraspecific_name": "strain=DSM 26809", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/13", "asm_name": "ASM305075v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003050755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/050/755/GCF_003050755.1_ASM305075v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5315671", "genome_size_ungapped": "5315671", "gc_percent": "46.000000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003050755.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4431", "protein_coding_gene_count": "4362", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-13", "dateModified": "2018-04-13", "datePublished": "2018-04-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter yixingensis" ], "sample_taxid": [ "1295612" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.510 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5315671", "Number of Sequences": "22", "Longest Sequences (bp)": "1118882", "N50 (bp)": "620510", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.8", "Number of CDSs": "4350", "Average Protein Length": "355.8", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter yixingensis", "strain": "strain=DSM 26809", "accession": "GCA_003050755.1", "taxid": 1295612, "species_taxid": 1295612, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1762, "total_fragments": 1762, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mucilaginibacter mali", "strain": "strain=G2-14", "accession": "GCA_013283875.1", "taxid": 2740462, "species_taxid": 2740462, "relation_to_type": "type", "validated": true, "ani": 77.8186, "matched_fragments": 469, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter myungsuensis", "strain": "strain=KCTC 22746", "accession": "GCA_015222005.1", "taxid": 649104, "species_taxid": 649104, "relation_to_type": "type", "validated": true, "ani": 77.5014, "matched_fragments": 293, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter celer", "strain": "strain=HYN0043", "accession": "GCA_003576455.2", "taxid": 2305508, "species_taxid": 2305508, "relation_to_type": "type", "validated": true, "ani": 77.4957, "matched_fragments": 312, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypii", "strain": "strain=Gh-67", "accession": "GCA_900100945.1", "taxid": 551996, "species_taxid": 551996, "relation_to_type": "type", "validated": true, "ani": 77.441, "matched_fragments": 267, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 77.42, "matched_fragments": 239, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 77.4034, "matched_fragments": 252, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter 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"strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 77.3332, "matched_fragments": 197, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter kameinonensis", "strain": "strain=SCK", "accession": "GCA_003675385.1", "taxid": 452286, "species_taxid": 452286, "relation_to_type": "type", "validated": true, "ani": 77.2977, "matched_fragments": 290, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter robiniae", "strain": "strain=F39-2", "accession": "GCA_012849215.1", "taxid": 2728022, "species_taxid": 2728022, "relation_to_type": "type", "validated": true, "ani": 77.2306, "matched_fragments": 162, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter polytrichastri", "strain": "strain=RG4-7", "accession": "GCA_001911425.1", "taxid": 1302689, "species_taxid": 1302689, "relation_to_type": "type", "validated": true, "ani": 77.2075, "matched_fragments": 237, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypiicola", "strain": "strain=Gh-48", "accession": "GCA_900110105.1", "taxid": 551995, "species_taxid": 551995, "relation_to_type": "type", "validated": true, "ani": 77.2056, "matched_fragments": 299, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 77.1758, "matched_fragments": 201, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=CCM 8625", "accession": "GCA_014635525.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.1257, "matched_fragments": 259, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter galii", "strain": "strain=CCM 8711", "accession": "GCA_014635825.1", "taxid": 2005073, "species_taxid": 2005073, "relation_to_type": "type", "validated": true, "ani": 77.114, "matched_fragments": 229, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter polytrichastri", "strain": "strain=DSM 26907", "accession": "GCA_900116355.1", "taxid": 1302689, "species_taxid": 1302689, "relation_to_type": "type", "validated": true, "ani": 77.1044, "matched_fragments": 240, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 77.1037, "matched_fragments": 267, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.0999, "matched_fragments": 258, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 77.0936, "matched_fragments": 229, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter corticis", "strain": "strain=MAH-19", "accession": "GCA_007558865.1", "taxid": 2597670, "species_taxid": 2597670, "relation_to_type": "type", "validated": true, "ani": 77.0579, "matched_fragments": 232, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003050755.1", "gtdb_species": "s__Mucilaginibacter yixingensis", "ani": 100.0, "matched_fragments": 1762, "total_fragments": 1762, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013283875.1", "gtdb_species": "s__Mucilaginibacter mali", "ani": 77.8277, "matched_fragments": 467, "total_fragments": 1762, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015223065.1", "gtdb_species": "s__Mucilaginibacter sp015223065", "ani": 77.6446, "matched_fragments": 255, "total_fragments": 1762, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015222005.1", "gtdb_species": "s__Mucilaginibacter myungsuensis", "ani": 77.4949, "matched_fragments": 293, "total_fragments": 1762, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003576455.2", "gtdb_species": "s__Mucilaginibacter celer", "ani": 77.4879, "matched_fragments": 315, "total_fragments": 1762, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018390515.1", "gtdb_species": "s__Mucilaginibacter sp018390515", "ani": 77.4388, "matched_fragments": 244, "total_fragments": 1762, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014643835.1", "gtdb_species": "s__Mucilaginibacter rubeus", "ani": 77.387, "matched_fragments": 280, "total_fragments": 1762, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_007846095.1", "gtdb_species": "s__Mucilaginibacter sp007846095", "ani": 77.3332, "matched_fragments": 197, "total_fragments": 1762, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.21", "min_intra_species_ani": "95.21", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001911425.1", "gtdb_species": "s__Mucilaginibacter polytrichastri", "ani": 77.1961, "matched_fragments": 238, "total_fragments": 1762, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900110105.1", "gtdb_species": "s__Mucilaginibacter gossypiicola", "ani": 77.1879, "matched_fragments": 302, "total_fragments": 1762, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", 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