{
    "type": "genome",
    "identifier": "GCF_003050785.1",
    "organism": "Celeribacter persicus",
    "title": "Celeribacter persicus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003050785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08779098",
        "wgs_master": "QAOH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1651082",
        "species_taxid": "1651082",
        "organism_name": "Celeribacter persicus",
        "infraspecific_name": "strain=DSM 100434",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/04/13",
        "asm_name": "ASM305078v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_003050785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/050/785/GCF_003050785.1_ASM305078v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4299547",
        "genome_size_ungapped": "4299354",
        "gc_percent": "60.500000",
        "replicon_count": "0",
        "scaffold_count": "94",
        "contig_count": "94",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003050785.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "4295",
        "protein_coding_gene_count": "4160",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-04-13",
    "dateModified": "2018-04-13",
    "datePublished": "2018-04-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Celeribacter persicus"
        ],
        "sample_taxid": [
            "1651082"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.209 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4299547",
        "Number of Sequences": "94",
        "Longest Sequences (bp)": "582089",
        "N50 (bp)": "216549",
        "Gap Ratio (%)": "0.004489",
        "GCcontent (%)": "60.4",
        "Number of CDSs": "4197",
        "Average Protein Length": "301.8",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Celeribacter persicus",
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                "relation_to_type": "type",
                "validated": true,
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                "status": "conclusive"
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                "status": "below_threshold"
            },
            {
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                "species_taxid": 588602,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Celeribacter indicus",
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                "species_taxid": 1208324,
                "relation_to_type": "type",
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                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Celeribacter indicus",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Celeribacter halophilus",
                "strain": "strain=ZXM137",
                "accession": "GCA_001550085.1",
                "taxid": 576117,
                "species_taxid": 576117,
                "relation_to_type": "type",
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                "ani": 80.7356,
                "matched_fragments": 685,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Celeribacter halophilus",
                "strain": "strain=CGMCC 1.8891",
                "accession": "GCA_900114135.1",
                "taxid": 576117,
                "species_taxid": 576117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7258,
                "matched_fragments": 670,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Celeribacter litoreus",
                "strain": "strain=ASW11-22",
                "accession": "GCA_020165855.1",
                "taxid": 2876714,
                "species_taxid": 2876714,
                "relation_to_type": "type",
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                "matched_fragments": 528,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger marinus",
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                "accession": "GCA_900100085.1",
                "taxid": 555512,
                "species_taxid": 555512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5561,
                "matched_fragments": 377,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodobacter amnigenus",
                "strain": "strain=HSP-20",
                "accession": "GCA_019130055.1",
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                "species_taxid": 2852097,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2008,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodobacter amnigenus",
                "strain": "strain=HSP-20",
                "accession": "GCA_009908265.2",
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                "species_taxid": 2852097,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.19,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cereibacter azotoformans",
                "strain": "strain=KA25",
                "accession": "GCA_003050905.1",
                "taxid": 43057,
                "species_taxid": 43057,
                "relation_to_type": "type",
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                "ani": 77.1372,
                "matched_fragments": 244,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus shandongensis",
                "strain": "strain=wg2",
                "accession": "GCA_017315735.1",
                "taxid": 2816048,
                "species_taxid": 2816048,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_003050785.1",
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                "matched_fragments": 1384,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter",
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            },
            {
                "accession": "GCF_011806455.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter",
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                "mean_intra_species_ani": "N/A",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter",
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                "num_clustered_genomes": 4,
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        ]
    },
    "_bac2feature": {
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        "growth_tmp": 27.666,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "persicus"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}