{ "type": "genome", "identifier": "GCF_003051025.1", "organism": "Mameliella alba", "title": "Mameliella alba", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003051025.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660877", "wgs_master": "QAOY00000000.1", "refseq_category": "na", "taxid": "561184", "species_taxid": "561184", "organism_name": "Mameliella alba", "infraspecific_name": "strain=DSM 26384", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/13", "asm_name": "ASM305102v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003051025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/051/025/GCF_003051025.1_ASM305102v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5264808", "genome_size_ungapped": "5264808", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003051025.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "5198", "protein_coding_gene_count": "5077", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-13", "dateModified": "2018-04-13", "datePublished": "2018-04-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Mameliella alba" ], "sample_taxid": [ "561184" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.454 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5264808", "Number of Sequences": "36", "Longest Sequences (bp)": "636858", "N50 (bp)": "337657", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.2", "Number of CDSs": "5122", "Average Protein Length": "310.2", "Coding Ratio (%)": "90.5", "Number of rRNAs": "4", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1736, "total_fragments": 1737, "ani_threshold": 95, "status": "conclusive" }, { 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"strain=CGMCC 1.12377", "accession": "GCA_014637265.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 79.4538, "matched_fragments": 662, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger thiooxidans", "strain": "strain=DSM 10146", "accession": "GCA_900102075.1", "taxid": 282683, "species_taxid": 282683, "relation_to_type": "type", "validated": true, "ani": 79.4272, "matched_fragments": 727, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=JLT2016", "accession": "GCA_001969385.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 79.4117, "matched_fragments": 698, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", 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