{ "type": "genome", "identifier": "GCF_003054265.1", "organism": "Kordia periserrulae", "title": "Kordia periserrulae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003054265.1", "bioproject": "PRJNA224116", "biosample": "SAMN08778573", "wgs_master": "QBKT00000000.1", "refseq_category": "reference genome", "taxid": "701523", "species_taxid": "701523", "organism_name": "Kordia periserrulae", "infraspecific_name": "strain=DSM 25731", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/17", "asm_name": "ASM305426v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003054265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/054/265/GCF_003054265.1_ASM305426v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4725576", "genome_size_ungapped": "4725576", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003054265.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4073", "protein_coding_gene_count": "4006", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-17", "dateModified": "2018-04-17", "datePublished": "2018-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Kordia periserrulae" ], "sample_taxid": [ "701523" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.316 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4725576", "Number of Sequences": "38", "Longest Sequences (bp)": "950822", "N50 (bp)": "505119", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.2", "Number of CDSs": "3963", "Average Protein Length": "344.1", "Coding Ratio (%)": "86.6", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kordia periserrulae", "strain": "strain=DSM 25731", "accession": "GCA_003054265.1", "taxid": 701523, "species_taxid": 701523, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1556, "total_fragments": 1556, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kordia algicida", "strain": "strain=OT-1", "accession": "GCA_000154725.1", "taxid": 221066, "species_taxid": 221066, "relation_to_type": "type", "validated": true, "ani": 80.9587, "matched_fragments": 918, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia jejudonensis", "strain": "strain=SSK3-3", "accession": "GCA_001005315.1", "taxid": 1348245, "species_taxid": 1348245, "relation_to_type": "type", "validated": true, "ani": 79.832, "matched_fragments": 823, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia aestuariivivens", "strain": "strain=YSTF-M3", "accession": "GCA_014397005.1", "taxid": 2759037, "species_taxid": 2759037, "relation_to_type": "type", "validated": true, "ani": 79.712, "matched_fragments": 862, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia antarctica", "strain": "strain=IMCC3317", "accession": "GCA_009901525.1", "taxid": 1218801, "species_taxid": 1218801, "relation_to_type": "type", "validated": true, "ani": 79.5984, "matched_fragments": 816, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia zhangzhouensis", "strain": "strain=MCCC 1A00726", "accession": "GCA_001005305.1", "taxid": 1620405, "species_taxid": 1620405, "relation_to_type": "type", "validated": true, "ani": 79.5365, "matched_fragments": 686, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 77.0643, "matched_fragments": 93, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella aquatilis", "strain": "strain=SJ7", "accession": "GCA_014270105.1", "taxid": 2762758, "species_taxid": 2762758, "relation_to_type": "type", "validated": true, "ani": 77.019, "matched_fragments": 78, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 76.6875, "matched_fragments": 117, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 76.6733, "matched_fragments": 87, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marixanthomonas spongiae", "strain": "strain=HN-E44", "accession": "GCA_003095375.1", "taxid": 2174845, "species_taxid": 2174845, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kordia", "periserrulae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }