{ "type": "genome", "identifier": "GCF_003054285.1", "organism": "Litoreibacter ponti", "title": "Litoreibacter ponti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003054285.1", "bioproject": "PRJNA224116", "biosample": "SAMN08776943", "wgs_master": "QBKS00000000.1", "refseq_category": "reference genome", "taxid": "1510457", "species_taxid": "1510457", "organism_name": "Litoreibacter ponti", "infraspecific_name": "strain=DSM 100977", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/17", "asm_name": "ASM305428v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003054285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/054/285/GCF_003054285.1_ASM305428v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3885483", "genome_size_ungapped": "3885483", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003054285.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3910", "protein_coding_gene_count": "3853", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-17", "dateModified": "2018-04-17", "datePublished": "2018-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Litoreibacter ponti" ], "sample_taxid": [ "1510457" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.084 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3885483", "Number of Sequences": "3", "Longest Sequences (bp)": "2739299", "N50 (bp)": "2739299", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "3857", "Average Protein Length": "308.1", "Coding Ratio (%)": "91.8", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Litoreibacter ponti", "strain": "strain=DSM 100977", "accession": "GCA_003054285.1", "taxid": 1510457, "species_taxid": 1510457, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1294, "total_fragments": 1294, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Litoreibacter arenae", "strain": "strain=DSM 19593", "accession": "GCA_000442275.2", "taxid": 491388, "species_taxid": 491388, "relation_to_type": "type", "validated": true, "ani": 79.8596, "matched_fragments": 618, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter halocynthiae", "strain": "strain=DSM 29467", "accession": "GCA_004365635.1", "taxid": 1242689, "species_taxid": 1242689, "relation_to_type": "type", "validated": true, "ani": 79.0323, "matched_fragments": 562, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter meonggei", "strain": "strain=DSM 29466", "accession": "GCA_003663885.1", "taxid": 1049199, "species_taxid": 1049199, "relation_to_type": "type", "validated": true, "ani": 78.9328, "matched_fragments": 552, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter janthinus", "strain": "strain=DSM 26921", "accession": "GCA_900111945.1", "taxid": 670154, "species_taxid": 670154, "relation_to_type": "type", "validated": true, "ani": 78.7186, "matched_fragments": 503, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter albidus", "strain": "strain=DSM 26922", "accession": "GCA_900107015.1", "taxid": 670155, "species_taxid": 670155, "relation_to_type": "type", "validated": true, "ani": 78.4522, "matched_fragments": 476, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 78.2323, "matched_fragments": 362, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribius salinus", "strain": "strain=DSM 26892", "accession": "GCA_900141995.1", "taxid": 313368, "species_taxid": 313368, "relation_to_type": "type", "validated": true, "ani": 78.2022, "matched_fragments": 407, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.9448, "matched_fragments": 345, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassorhabdomicrobium marinisediminis", "strain": "strain=BH-SD16", "accession": "GCA_003072065.1", "taxid": 2170577, "species_taxid": 2170577, "relation_to_type": "type", "validated": true, "ani": 77.8923, "matched_fragments": 323, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 77.774, "matched_fragments": 340, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marina", "strain": "strain=CGMCC 1.9108", "accession": "GCA_900101475.1", "taxid": 639004, "species_taxid": 639004, "relation_to_type": "type", "validated": true, "ani": 77.7243, "matched_fragments": 353, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax isoporae", "strain": "strain=LMG 25204", "accession": "GCA_000521865.1", "taxid": 591206, "species_taxid": 591206, "relation_to_type": "type", "validated": true, "ani": 77.7053, "matched_fragments": 352, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiruegeria sabulilitoris", "strain": "strain=GJMS-35", "accession": "GCA_001558155.1", "taxid": 1510458, "species_taxid": 1510458, "relation_to_type": "type", "validated": true, "ani": 77.6845, "matched_fragments": 309, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 77.6564, "matched_fragments": 314, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia sediminis", "strain": "strain=SS33", "accession": "GCA_004358695.1", "taxid": 2547833, "species_taxid": 2547833, "relation_to_type": "type", "validated": true, "ani": 77.6364, "matched_fragments": 308, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.5826, "matched_fragments": 327, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.5627, "matched_fragments": 319, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia sediminis", "strain": "strain=ZQ172", "accession": "GCA_003990645.1", "taxid": 2497945, "species_taxid": 2497945, "relation_to_type": "type", "validated": true, "ani": 77.5054, "matched_fragments": 240, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 77.503, "matched_fragments": 295, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus ximenensis", "strain": "strain=T1lg56", "accession": "GCA_003056725.1", "taxid": 1911570, "species_taxid": 1911570, "relation_to_type": "type", "validated": true, "ani": 77.4095, "matched_fragments": 325, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 77.2271, "matched_fragments": 205, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003054285.1", "gtdb_species": "s__Litoreibacter ponti", "ani": 100.0, "matched_fragments": 1294, "total_fragments": 1294, "gtdb_taxonomy": 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