{ "type": "genome", "identifier": "GCF_003054325.1", "organism": "Sulfitobacter mediterraneus", "title": "Sulfitobacter mediterraneus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003054325.1", "bioproject": "PRJNA224116", "biosample": "SAMN08778570", "wgs_master": "QBKU00000000.1", "refseq_category": "na", "taxid": "83219", "species_taxid": "83219", "organism_name": "Sulfitobacter mediterraneus", "infraspecific_name": "strain=DSM 12244", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/17", "asm_name": "ASM305432v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003054325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/054/325/GCF_003054325.1_ASM305432v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4099776", "genome_size_ungapped": "4099776", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003054325.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4020", "protein_coding_gene_count": "3954", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-17", "dateModified": "2018-04-17", "datePublished": "2018-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfitobacter mediterraneus" ], "sample_taxid": [ "83219" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.153 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4099776", "Number of Sequences": "39", "Longest Sequences (bp)": "592394", "N50 (bp)": "329315", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.1", "Number of CDSs": "4010", "Average Protein Length": "309.6", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfitobacter mediterraneus", "strain": "strain=DSM 12244", "accession": "GCA_003054325.1", "taxid": 83219, "species_taxid": 83219, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1343, 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"below_threshold" }, { "organism_name": "Sulfitobacter sediminilitoris", "strain": "strain=JBTF-M27", "accession": "GCA_010667575.1", "taxid": 2698830, "species_taxid": 2698830, "relation_to_type": "type", "validated": true, "ani": 78.5072, "matched_fragments": 536, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=HEL-45", "accession": "GCA_000172095.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 78.4975, "matched_fragments": 463, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 78.4753, "matched_fragments": 474, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter delicatus", "strain": "strain=DSM 16477", "accession": "GCA_900102535.1", "taxid": 218672, "species_taxid": 218672, "relation_to_type": "type", "validated": true, "ani": 78.415, "matched_fragments": 482, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter maritimus", "strain": "strain=S0837", "accession": "GCA_013346665.1", "taxid": 2741719, "species_taxid": 2741719, "relation_to_type": "type", "validated": true, "ani": 78.3628, "matched_fragments": 412, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter brevis", "strain": "strain=DSM 11443", "accession": "GCA_900112755.1", "taxid": 74348, "species_taxid": 74348, "relation_to_type": "type", "validated": true, "ani": 78.2619, "matched_fragments": 483, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter pontiacus", "strain": "strain=DSM 10014", "accession": "GCA_900106935.1", "taxid": 60137, "species_taxid": 60137, "relation_to_type": "type", "validated": true, "ani": 78.2301, "matched_fragments": 468, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter donghicola", "strain": "strain=JCM 14565", "accession": "GCA_000712275.1", "taxid": 421000, "species_taxid": 421000, "relation_to_type": "type", "validated": true, "ani": 78.1475, "matched_fragments": 317, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter litoralis", "strain": "strain=DSM 17584", "accession": "GCA_900103185.1", "taxid": 335975, "species_taxid": 335975, "relation_to_type": "type", "validated": true, "ani": 78.1467, "matched_fragments": 398, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter aestuariivivens", "strain": "strain=TSTF-M16", "accession": "GCA_014763045.1", "taxid": 2766981, "species_taxid": 2766981, "relation_to_type": "type", "validated": true, "ani": 78.1023, "matched_fragments": 446, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter donghicola", "strain": "strain=KCTC 12864", "accession": "GCA_000622405.1", "taxid": 421000, "species_taxid": 421000, "relation_to_type": "type", "validated": true, "ani": 78.0969, "matched_fragments": 328, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.9233, "matched_fragments": 465, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.9193, "matched_fragments": 450, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera methylohalidivorans", "strain": "strain=DSM 14336; MB2", "accession": "GCA_000511355.1", "taxid": 133924, "species_taxid": 133924, "relation_to_type": "type", "validated": true, "ani": 77.4945, "matched_fragments": 327, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutimaribacter saemankumensis", "strain": "strain=DSM 28010", "accession": "GCA_900100005.1", "taxid": 490829, "species_taxid": 490829, "relation_to_type": "type", "validated": true, "ani": 76.9926, "matched_fragments": 256, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 76.6978, "matched_fragments": 230, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter ruber", "strain": "strain=CCP-1", "accession": "GCA_009908315.1", "taxid": 1985673, "species_taxid": 1985673, "relation_to_type": "type", "validated": true, "ani": 76.3753, "matched_fragments": 174, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia sediminis", "strain": "strain=SS33", "accession": "GCA_004358695.1", "taxid": 2547833, "species_taxid": 2547833, "relation_to_type": "type", "validated": true, "ani": 76.3363, "matched_fragments": 131, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 76.2635, "matched_fragments": 184, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Sulfitobacter", "mediterraneus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }