{ "type": "genome", "identifier": "GCF_003054555.1", "organism": "Streptomyces lunaelactis", "title": "Streptomyces lunaelactis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Aymeric Naome's shared submissions", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003054555.1", "bioproject": "PRJNA224116", "biosample": "SAMN08367447", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1535768", "species_taxid": "1535768", "organism_name": "Streptomyces lunaelactis", "infraspecific_name": "strain=MM109", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/17", "asm_name": "ASM305455v1", "asm_submitter": "Aymeric Naome's shared submissions", "gbrs_paired_asm": "GCA_003054555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/054/555/GCF_003054555.1_ASM305455v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8570191", "genome_size_ungapped": "8570191", "gc_percent": "70.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003054555.1-RS_2024_08_23", "annotation_date": "2024-08-23", "total_gene_count": "7833", "protein_coding_gene_count": "7387", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-17", "dateModified": "2018-04-17", "datePublished": "2018-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces lunaelactis" ], "sample_taxid": [ "1535768" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium: Comblain-au-Pont" ], "sample_host_location_id": [], "data_size": "2.324 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8570191", "Number of Sequences": "3", "Longest Sequences (bp)": "8396100", "N50 (bp)": "8396100", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.8", "Number of CDSs": "7923", "Average Protein Length": "316.0", "Coding Ratio (%)": "87.6", "Number of rRNAs": "18", "Number of tRNAs": "76", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces lunaelactis", "strain": "strain=MM109", "accession": "GCA_003054555.1", "taxid": 1535768, "species_taxid": 1535768, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2855, "total_fragments": 2855, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces formicae", "strain": "strain=1H-GS9", "accession": "GCA_022647665.1", "taxid": 1616117, "species_taxid": 1616117, "relation_to_type": "type", "validated": true, "ani": 84.2174, "matched_fragments": 1579, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces kurssanovii", "strain": "strain=JCM 4388", "accession": "GCA_014649695.1", "taxid": 67312, "species_taxid": 67312, "relation_to_type": "type", "validated": true, "ani": 84.1407, "matched_fragments": 1589, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces xantholiticus", "strain": "strain=JCM 4863", "accession": "GCA_014651015.1", "taxid": 68285, "species_taxid": 68285, "relation_to_type": "type", "validated": true, "ani": 84.1333, "matched_fragments": 1529, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces purpureus", "strain": "strain=JCM 3172", "accession": "GCA_014648195.1", "taxid": 1951, "species_taxid": 1951, "relation_to_type": "type", "validated": true, "ani": 83.6676, "matched_fragments": 1481, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces scopuliridis", "strain": "strain=RB72", "accession": "GCA_003073355.1", "taxid": 452529, "species_taxid": 452529, "relation_to_type": "type", "validated": true, "ani": 83.6239, "matched_fragments": 1348, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces scopuliridis", "strain": "strain=NRRL B-24574", "accession": "GCA_000718095.1", "taxid": 452529, "species_taxid": 452529, "relation_to_type": "type", "validated": true, "ani": 83.5601, "matched_fragments": 1463, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lateritius", "strain": "strain=JCM 4389", "accession": "GCA_014649715.1", "taxid": 67313, "species_taxid": 67313, "relation_to_type": "type", "validated": true, "ani": 83.4133, "matched_fragments": 1443, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces melanogenes", "strain": "strain=JCM 4398", "accession": "GCA_014649795.1", "taxid": 67326, "species_taxid": 67326, "relation_to_type": "type", "validated": true, "ani": 83.3086, "matched_fragments": 1498, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces inusitatus", "strain": "strain=JCM 4988", "accession": "GCA_014651115.1", "taxid": 68221, "species_taxid": 68221, "relation_to_type": "type", "validated": true, "ani": 83.2725, "matched_fragments": 1341, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lavendofoliae", "strain": "strain=JCM 4391", "accession": "GCA_014649735.1", "taxid": 67314, "species_taxid": 67314, "relation_to_type": "type", "validated": true, "ani": 83.2597, "matched_fragments": 1406, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces gelaticus", "strain": "strain=JCM 4376", "accession": "GCA_014649535.1", "taxid": 285446, "species_taxid": 285446, "relation_to_type": "type", "validated": true, "ani": 83.1763, "matched_fragments": 1374, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces violascens", "strain": "strain=NBRC 12920", "accession": "GCA_020521295.1", "taxid": 67381, "species_taxid": 67381, "relation_to_type": "type", "validated": true, "ani": 83.1533, "matched_fragments": 1420, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces genisteinicus", "strain": "strain=CRPJ-33", "accession": "GCA_014489615.1", "taxid": 2768068, "species_taxid": 2768068, "relation_to_type": "type", "validated": true, "ani": 83.0723, "matched_fragments": 1489, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces violascens", "strain": "strain=JCM 4424", "accession": "GCA_014649955.1", "taxid": 67381, "species_taxid": 67381, "relation_to_type": "type", "validated": true, "ani": 82.9756, "matched_fragments": 1415, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cinereoruber", "strain": "strain=JCM 4205", "accession": "GCA_014649095.1", "taxid": 67260, "species_taxid": 67260, "relation_to_type": "type", "validated": true, "ani": 82.775, "matched_fragments": 1327, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces litmocidini", "strain": "strain=JCM 4394", "accession": "GCA_014649755.1", "taxid": 67318, "species_taxid": 67318, "relation_to_type": "type", "validated": true, "ani": 82.716, "matched_fragments": 1396, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Kitasatospora] papulosa", "strain": "strain=NRRL B-16504", "accession": "GCA_000717245.1", "taxid": 1464011, "species_taxid": 1464011, "relation_to_type": "type", "validated": true, "ani": 82.4284, "matched_fragments": 1311, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sudanensis", "strain": "strain=SD 504", "accession": "GCA_023614315.1", "taxid": 436397, "species_taxid": 436397, "relation_to_type": "type", "validated": true, "ani": 82.1111, "matched_fragments": 1047, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces somaliensis", "strain": "strain=DSM 40738", "accession": "GCA_024349285.1", "taxid": 78355, "species_taxid": 78355, "relation_to_type": "type", "validated": true, "ani": 82.0675, "matched_fragments": 1045, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=DSM 46492", "accession": "GCA_001514135.1", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 81.9748, "matched_fragments": 1450, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=NBRC 14893", "accession": "GCA_005405965.1", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 81.9682, "matched_fragments": 1507, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=MA-4680", "accession": "GCA_000009765.2", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 81.9124, "matched_fragments": 1477, "total_fragments": 2855, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003054555.1", "gtdb_species": "s__Streptomyces lunaelactis", "ani": 100.0, "matched_fragments": 2855, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.21", "min_intra_species_ani": "97.91", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 18, "status": "conclusive" }, { "accession": "GCF_018614585.1", "gtdb_species": "s__Streptomyces sp018614585", "ani": 88.2269, "matched_fragments": 1710, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006715635.1", "gtdb_species": "s__Streptomyces sp006715635", "ani": 87.3706, "matched_fragments": 1796, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001278075.1", "gtdb_species": "s__Streptomyces pristinaespiralis", "ani": 84.3871, "matched_fragments": 1569, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.72", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018614575.1", "gtdb_species": "s__Streptomyces sp018614575", "ani": 84.3146, "matched_fragments": 1530, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014649695.1", "gtdb_species": "s__Streptomyces kurssanovii", "ani": 84.1776, "matched_fragments": 1583, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014651015.1", "gtdb_species": "s__Streptomyces xantholiticus", "ani": 84.168, "matched_fragments": 1523, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.93", "min_intra_species_ani": "95.93", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018614055.1", "gtdb_species": "s__Streptomyces sp018614055", "ani": 84.0128, "matched_fragments": 1597, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001653515.1", "gtdb_species": "s__Streptomyces sp001653515", "ani": 83.5601, "matched_fragments": 1263, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009600885.1", "gtdb_species": "s__Streptomyces jumonjinensis_A", "ani": 83.327, "matched_fragments": 1372, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.98", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014649795.1", "gtdb_species": "s__Streptomyces melanogenes", "ani": 83.2935, "matched_fragments": 1500, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.19", "min_intra_species_ani": "95.19", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014649735.1", "gtdb_species": "s__Streptomyces lavendofoliae", "ani": 83.2702, "matched_fragments": 1404, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014596475.1", "gtdb_species": "s__Streptomyces sp014596475", "ani": 83.2195, "matched_fragments": 1397, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900091955.1", "gtdb_species": "s__Streptomyces sp900091955", "ani": 83.2052, "matched_fragments": 1428, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014649535.1", "gtdb_species": "s__Streptomyces gelaticus", "ani": 83.1721, "matched_fragments": 1374, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014646115.1", "gtdb_species": "s__Streptomyces camponoticapitis", "ani": 82.8608, "matched_fragments": 1421, "total_fragments": 2855, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 28.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8570190.0, "gc_content": 69.709, "coding_genes": 7148.0, "rRNA16S_genes": 6.155, "tRNA_genes": 66.0, "gram_stain": 0.998, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "lunaelactis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }